Complete genome of <italic style="font-style: italic">Cobetia marina</italic> JCM 21022<sup>T</sup> and phylogenomic analysis of the family Halomonadaceae

唐祥海; 徐奎鹏; 韩晓娟; 莫照兰; 茅云翔

doi:10.1007/s00343-017-6239-6

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Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae

Biology | Updated：2023-05-19

- Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae
- Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae
- 海洋湖沼学报（英文） 2018年36卷第2期页码：528-536
- Affiliations：
  
  1.Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
  2.Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China
  3.CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Author bio：
  
  MAO Yunxiang, yxmao@ouc.edu.cn
- Funds：
  
  the National Natural Science Foundation of China(41006082);the National Natural Science Foundation of China(31372517)
- DOI：10.1007/s00343-017-6239-6
  中图分类号：
- 收稿：2016-09-04，
  
  录用：2016-9-8，
  
  网络首发：2016-09-14，
  
  纸质出版：2018-03
- Accepted：
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唐祥海, 徐奎鹏, 韩晓娟, 等. Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae[J]. 海洋湖沼学报（英文）, 2018,36(2):528-536.

Xianghai TANG, Kuipeng XU, Xiaojuan HAN, et al. Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 528-536.
唐祥海, 徐奎鹏, 韩晓娟, 等. Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae[J]. 海洋湖沼学报（英文）, 2018,36(2):528-536. DOI： 10.1007/s00343-017-6239-6.

Xianghai TANG, Kuipeng XU, Xiaojuan HAN, et al. Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 528-536. DOI： 10.1007/s00343-017-6239-6.

摘要

Abstract

Cobetia marina

is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. To better understand the role of the surface-associated lifestyle of

C. marina

and the phylogeny of the family Halomonadaceae

we sequenced the entire genome of

C. marina

JCM 21022

using single molecule real-time sequencing technology (SMRT) and performed comparative genomics and phylogenomics analyses. The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences

72 tRNA genes

and 21 rRNA genes. The

C. marina

JCM 21022

genome contained a set of crucial genes involved in surface colonization processes. The comparative genome analysis indicated the significant differences between

C. marina

JCM 21022

and

Cobetia amphilecti

KMM 296 (formerly named

C. marina

KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these differences

pan and core genome analysis showed similar gene functions between the two strains. The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested

including

Chromohalobacter

Halomonas

Cobetia

Kushneria

Zymobacter

and

Halotalea

关键词

Keywords

references

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Complete genome of Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae

Complete genome of Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae

DOI：10.1007/s00343-017-6239-6

摘要

Abstract

关键词

Keywords

references

Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae

Complete genome of Cobetia marina JCM 21022^T and phylogenomic analysis of the family Halomonadaceae