Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification
OriginalPaper|Updated:2023-05-16
|
Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification
Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification
海洋湖沼学报(英文)2010年28卷第2期 页码:233-238
Affiliations:
1. Key Laboratory of Experimental Marine Biology Institute of Oceanology Chinese Academy of Sciences
2. Graduate University of Chinese Academy of Sciences
Author bio:
Funds:
Supported by the Key Program of the National Natural Science Foundation of China (No. 30730071), the National High-Tech Research and Development Program of China (863 program) (No. 2007AA09Z430) and the General Program of National Natural Science Foundation of China (Nos. 30471347 & 40706048)
Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification[J]. 海洋湖沼学报(英文), 2010,28(2):233-238.
Huan, P., Zhang, X., Li, F. et al. Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification., Chin. J. Ocean. Limnol. 28, 233–238 (2010). https://doi.org/10.1007/s00343-010-9278-9
Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification[J]. 海洋湖沼学报(英文), 2010,28(2):233-238. DOI: 10.1007/s00343-010-9278-9.
Huan, P., Zhang, X., Li, F. et al. Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification., Chin. J. Ocean. Limnol. 28, 233–238 (2010). https://doi.org/10.1007/s00343-010-9278-9DOI:
Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis): a chromosome-specific marker for chromosome identification
摘要
Abstract
Chinese shrimp (Fenneropenaeus chinensis) is an economically important aquaculture species in China. However
cytogenetic and genomic data is limited in the organism partly because the chromosomes are difficult to isolate and analyze. In this study
fluorescence in-situ hybridization (FISH) was used to identify the chromosomes of F. chinensis. The 5S ribosomal RNA gene (rDNA) of F. chinensis was isolated
cloned and then used as a hybridization probe. The results show that the 5S rDNA was located on one pair of homologous chromosomes in F. chinensis. In addition
triploid shrimp were used to evaluate the feasibility of chromosome identification using FISH and to validate the method. It was confirmed that 5S rDNA can be used as a chromosome-specific probe for chromosome identification in F. chinensis. The successful application of FISH in F. chinensis shows that chromosome-specific probes can be developed and this finding will facilitate further research on the chromosomes of penaeid shrimps.
关键词
Keywords
references
Alcivar-Warren A, Meehan-Meola D, Wang Y, Guo X, Zhou L, Xiang J, Moss S, Arce S, Warren W, Xu Z, Bell K. 2006. Isolation and mapping of telomeric pentanucleotide (TAACC)n repeats of the Pacific whiteleg shrimp, Penaeus vannamei, using fluorescence in situ hybridization. Mar. Biotechnol., 8(6):467–480.
Dai J, Zhang Q, Bao Z. 1989. Karyotype studies on penaeus orientalis. Journal of Ocean University of Qingdao, 19(4): 97–104.
Huang Y H, Zhao Y H, Haley C S, Hu S Q, Hao J P, Wu C X, Li N. 2006. A genetic and cytogenetic map for the duck (Anas platyrhynchos). Genetics, 173(1): 287–296.
Insua A, López-Pión M J, Freire R, Méndez J. 2006. Karyotype and chromosomal location of 18S-28S and 5S ribosomal DNA in the scallops Pecten maximus and Mimachlamys varia (Bivalvia: Pectinidae). Genetica, 126(3): 291–301.
Li F H, Xiang J H, Zhou L H, Wu C G, Zhang X J. 2003. Optimization of triploid induction by heat shock in Chinese shrimp Fenneropenaeus chinensis. Aquaculture, 219(1–4): 221–231.
Li Z X, Li J, Wang Q Y, He Y Y, Liu P. 2006. AFLP-based genetic linkage map of marine shrimp Penaeus (Fenneropenaeus) chinensis. Aquaculture, 261(2): 463–472.
Liu P, Mai M, Wang Q Y, Kong J, Yang C H. 1992. Karyotype analysis on chromosome in Penaeus Chinensis. Mar. Fish Res., 13: 29–34. (in Chinese with English abstract)
Noleto R B, Vicari M R, Cipriano R R, Artoni R F, Cestari M M. 2007. Physical mapping of 5S and 45S rDNA loci in pufferfishes (Tetraodontiformes). Genetica, 130(2): 133–138.
Pelliccia F, Barzotti R, Volpi E V, Bucciarelli E, Rocchi A. 1998. Nucleotide sequence and chromosomal mapping of the 5S rDNA repeat of the crustacean Proasellus coxalis. Genome, 41(1): 129–133.
Stewart Jr C N, Via L E. 1993. A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques, 14(5): 748–749.
Tigano C, Rocco L, Ferrito V, Costagliola D, Pappalardo A M, Stingo V. 2004. Chromosomal mapping and molecular characterization of ribosomal RNA genes in Lebias fasciata (Teleostei, Cyprinodontidae). Genetica, 121(1): 95–100.
Wang Y P, Xu Z, Guo X M. 2004. Differences in the rDNA-bearing chromosome divide the Asian-Pacific and Atlantic species of Crassostrea (Bivalvia, Mollusca). Biol. Bull., 206(1): 46–54.
Wang Y P, Xu Z, Pierce J C, Guo X M. 2005. Characterization of eastern oyster (Crassostrea virginica Gmelin) chromosomes by fluorescence in situ hybridization with bacteriophage P1 clones. Mar. Biotechnol., (NY), 7(3): 207–214.
Weier H U G. 2001. DNA fiber mapping techniques for the assembly of high-resolution physical maps. J. Histochem. Cytochem., 49(8): 939–948.
Wuthisuthimethavee S, Lumubol P, Toojinda T, Tragoonrung S, Vanavichit A. 2005. SSLP-based linkage map construction in black tiger shrimp (Penaeus monodon Fabricius). Sci. Asia, 31: 91–97.
Xiang J H. 1988. Research on chromosomes of Chinese shrimp. Oceanol. Limnol. Sin., 19: 205–208. (in Chinese)
Zhang L S, Yang C J, Zhang Y, Li L, Zhang X M, Zhang Q L, Xiang J H. 2007. A genetic linkage map of Pacific white shrimp (Litopenaeus vannamei): sex-linked microsatellite markers and high recombination rates. Genetica, 131(1): 37–49.
Zhang X J, Zhang Y, Zhang H B, Li F H, Liu B, Xiang J H. 2007. Construction of a bac library of pacific white shrimp (Liptopenaeus vannamei). Plant and Animal Genome XV Conference.
Zhu H P, Ma D M, Gui J F. 2006. Triploid origin of the gibel carp as revealed by 5S rDNA localization and chromosome painting. Chromosome Res., 14(7): 767–776.
The trial reading is over, you can activate your VIP account to continue reading.
Chromosomal mapping of 5S and 18S-5.8S-25S rRNA genes in Saccharina japonica (Phaeophyceae) as visualized by dual-color fluorescence in situ hybridization
Peptidomic analysis of Chinese shrimp (Fenneropenaeus chinensis) hemolymph by magnetic bead-based MALDI-TOF MS
Chromosome behavior of heat shock induced triploid inFenneropenaeus chinensis
Isolation, cloning and sequencing of AFLP markers related to disease-resistance traits inFenneropenaeus chinensis
Effects of salinity fluctuation amplitudes on growth, osmolarity, Na+-K+-ATPase activity and Hsp70 of juvenile Chinese shrimp Fenneropenaeus chinensis Osbeck
相关作者
Zhigang ZHOU
Yanhui BI
Pengfei LIU
Yu LIU
Lei Wang
Guofan Zhang
Keyong Jiang
Mei Liu
相关机构
International Research Center for Marine Biosciences Conferred by Ministry of Science and Technology, Shanghai Ocean University
National Demonstration Center for the Experimental Teaching of Fisheries Science, Shanghai Ocean University
Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources Conferred by Ministry of Education, Shanghai Ocean University
Institute of Oceanlogy Chinese Academy of Sciences
Institute of Oceanology Chinese Academy of Sciences