A simple method encoding linear single strain DNA sequence with natural numbers

Jiye Li; Yuan Xu; Wang Zhang

doi:10.1007/s00343-008-0385-9

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A simple method encoding linear single strain DNA sequence with natural numbers

OriginalPaper | Updated：2023-05-16

- A simple method encoding linear single strain DNA sequence with natural numbers
- A simple method encoding linear single strain DNA sequence with natural numbers
- 海洋湖沼学报（英文） 2008年26卷第4期页码：385-387
- Affiliations：
  
  1. College of Marine Life Sciences Ocean University of China
  2. Center of Network Ocean University of China
  3. Qingdao Vocational School of Chemical Technology
- Author bio：
- Funds：
  
  Supported by the National High Technology Research and Development Program of China (863 Program) (No. 2003AA622030)
- DOI：10.1007/s00343-008-0385-9
  中图分类号：
- 网络首发：2009-01-23，
  
  纸质出版：2008
- Accepted：
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A simple method encoding linear single strain DNA sequence with natural numbers[J]. 海洋湖沼学报（英文）, 2008,26(4):385-387.

Li, J., Xu, Y. & Zhang, W. A simple method encoding linear single strain DNA sequence with natural numbers., Chin. J. Ocean. Limnol. 26, 385–387 (2008). https://doi.org/10.1007/s00343-008-0385-9
A simple method encoding linear single strain DNA sequence with natural numbers[J]. 海洋湖沼学报（英文）, 2008,26(4):385-387. DOI： 10.1007/s00343-008-0385-9.

Li, J., Xu, Y. & Zhang, W. A simple method encoding linear single strain DNA sequence with natural numbers., Chin. J. Ocean. Limnol. 26, 385–387 (2008). https://doi.org/10.1007/s00343-008-0385-9 DOI：

摘要

Abstract

A simple method presenting linear single strain DNA (LssDNA) sequence with natural numbers is introduced in this paper. The method presents LssDNA correspondingly with the numerals 1

3 and 4. After calculation

the sequence can be coded in natural numbers which can also be decoded into the DNA sequence. Thus

an LssDNA sequence can be expressed in a natural number and a dot at coordinate axes. In the future

a new LssDNA sequences database termed “DotBank” would be realized in which each LssDNA sequence is determined as a dot.

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references

Hamori, E. and J. H. Ruski, 1983. Curves a novel method of representation of nucleotide series especially suited for long DNA sequences. J. Biol. Chem. 258: 1 318–1 327.

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Lobry, J. R., 1996. A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria. Biochimie 78: 323–326.

Wang, J. and Y. Zhang, 2006. Characterization and similarity analysis of DNA sequences grounded on a 2-D graphical representation. Chemical Physics Letters 423: 50–53.

Zhang, C. T., R. Zhang and H. Y. Ou, 2003. The Z curve database: a graphic representation of genome sequences. Bioinformatics 19: 593–599.

Zhang, C. T. and R. Zhang, 1991. Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res. 19: 6 313–6 317.

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