The first complete organellar genomes of an Antarctic red alga, <italic style="font-style: italic">Pyropia endiviifolia</italic>: insights into its genome architecture and phylogenetic position within genus <italic style="font-style: italic">Pyropia</italic> (Bangiales, Rhodophyta)

Kuipeng XU; Xianghai TANG; Guiqi BI; Min CAO; Lu WANG; Yunxiang MAO

doi:10.1007/s00343-018-7088-7

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The first complete organellar genomes of an Antarctic red alga, Pyropia endiviifolia: insights into its genome architecture and phylogenetic position within genus Pyropia (Bangiales, Rhodophyta)

Biology | Updated：2023-05-19

- The first complete organellar genomes of an Antarctic red alga, Pyropia endiviifolia: insights into its genome architecture and phylogenetic position within genus Pyropia (Bangiales, Rhodophyta)
- Chinese Journal of Oceanology and Limnology Vol. 36, Issue 4, Pages: 1315-1328(2018)
- Affiliations：
  
  1.Key Laboratory of Marine Genetics and Breeding(Ocean University of China), Ministry of Education, Qingdao 266003, China
  2.Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266003, China
- Author bio：
  
  TANG Xianghai, txianghai@ouc.edu.cn
  MAO Yunxiang, yxmao@ouc.edu.cn
- Funds：
- DOI：10.1007/s00343-018-7088-7
  CLC：
- Received：20 March 2017，
  
  Accepted：04 May 2017，
  
  Online First：15 June 2017，
  
  Published：2018-07
- Accepted：
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Kuipeng XU, Xianghai TANG, Guiqi BI, et al. The first complete organellar genomes of an Antarctic red alga, Pyropia endiviifolia: insights into its genome architecture and phylogenetic position within genus Pyropia (Bangiales, Rhodophyta)[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(4): 1315-1328.
DOI：

Kuipeng XU, Xianghai TANG, Guiqi BI, et al. The first complete organellar genomes of an Antarctic red alga, Pyropia endiviifolia: insights into its genome architecture and phylogenetic position within genus Pyropia (Bangiales, Rhodophyta)[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(4): 1315-1328. DOI： 10.1007/s00343-018-7088-7.

摘要

Abstract

Pyropia

species grow in the intertidal zone and are cold-water adapted. To date

most of the information about the whole plastid and mitochondrial genomes (ptDNA and mtDNA) of this genus is limited to Northern Hemisphere species. Here

we report the sequencing of the ptDNA and mtDNA of the Antarctic red alga

Pyropia endiviifolia

using the Illumina platform. The plastid genome (195 784 bp

33.28% GC content) contains 210 protein-coding genes

37 tRNA genes and 6 rRNA genes. The mitochondrial genome (34 603 bp

30.5% GC content) contains 26 protein-coding genes

25 tRNA genes and 2 rRNA genes. Our results suggest that the organellar genomes of

Py. endiviifolia

have a compact organization. Although the collinearity of these genomes is conserved compared with other

Pyropia

species

the genome sizes show significant differences

mainly because of the different copy numbers of rDNA operons in the ptDNA and group Ⅱ introns in the mtDNA. The other

Pyropia

species have 2-3 distinct intronic ORFs in their cox1 genes

but

Py. endiviifolia

has no introns in its

cox

1 gene. This has led to a smaller mtDNA than in other

Pyropia

species. The phylogenetic relationships within

Pyropia

were examined using concatenated gene sets from most of the available organellar genomes with both the maximum likelihood and Bayesian methods. The analysis revealed a sister taxa affiliation between the Antarctic species

Py. endiviifolia

and the North American species

Py. kanakaensis

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references

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The first complete organellar genomes of an Antarctic red alga, Pyropia endiviifolia: insights into its genome architecture and phylogenetic position within genus Pyropia (Bangiales, Rhodophyta)

DOI：10.1007/s00343-018-7088-7

摘要

Abstract

关键词

Keywords

references