De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop <italic style="font-style: italic">Argopecten irradians</italic>

Wen TENG; Rihao CONG; Huayong QUE; Guofan ZHANG

doi:10.1007/s00343-018-7063-3

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De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians

Aquaculture and Fisheries | Updated：2023-05-19

- De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians
- Chinese Journal of Oceanology and Limnology Vol. 36, Issue 4, Pages: 1408-1416(2018)
- Affiliations：
  
  1.Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
  2.University of Chinese Academy of Sciences, Beijing 100049, China
  3.Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
  4.National & Local Joint Engineering Laboratory of Ecological Mariculture, Qingdao 266000, China
- Author bio：
  
  QUE Huayong, hque@qdio.ac.cn
- Funds：
- DOI：10.1007/s00343-018-7063-3
  CLC：
- Received：03 March 2017，
  
  Accepted：20 April 2017，
  
  Online First：08 June 2017，
  
  Published：2018-07
- Accepted：
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Wen TENG, Rihao CONG, Huayong QUE, et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(4): 1408-1416.
DOI：

Wen TENG, Rihao CONG, Huayong QUE, et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(4): 1408-1416. DOI： 10.1007/s00343-018-7063-3.

摘要

Abstract

Molluscan shell color has received persistent attention for its distinctive diversity and complexity. In the present study

six transcriptome libraries obtained from two developmental stages

pre-pigmentation and post-pigmentation

were used for paired-end sequencing in the bay scallop

Argopecten irradians

. In total

289 839 646 paired-end reads were assembled into 70 929 transcripts. Using BLASTX and BLASTN

30 896 unigenes were successfully annotated against the SWISS-PROT

and KOG database. Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes classification identified numbers of unigenes involved in biomineralization and pigmentation. Digital gene expression analysis revealed that melanin

trace metal elements and porphyrins are potentially involved in shell coloration of

A. irradians

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references

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De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians

DOI：10.1007/s00343-018-7063-3

摘要

Abstract

关键词

Keywords

references