Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead <italic style="font-style: italic">Channa argus</italic> Cantor, 1842

Shuyan MIAO; Chenze ZHAO; Jinyu ZHU; Mingzhu PAN

doi:10.1007/s00343-018-6292-9

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Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842

Biology | Updated：2023-05-19

- Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842
- Chinese Journal of Oceanology and Limnology Vol. 36, Issue 2, Pages: 450-456(2018)
- Affiliations：
  
  College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China
- Author bio：
  
  MIAO Shuyan, shuyanmiao@126.com
- Funds：
- DOI：10.1007/s00343-018-6292-9
  CLC：
- Received：27 November 2016，
  
  Accepted：17 January 2017，
  
  Online First：14 February 2017，
  
  Published：2018-03
- Accepted：
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Shuyan MIAO, Chenze ZHAO, Jinyu ZHU, et al. Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 450-456.
DOI：

Shuyan MIAO, Chenze ZHAO, Jinyu ZHU, et al. Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 450-456. DOI： 10.1007/s00343-018-6292-9.

摘要

Abstract

Microbial communities in different gastrointestinal regions (stomach

foregut

midgut

and hindgut) of the northern snakehead

Channa argus

(Cantor

1842) were compared by polymerase chain reaction and partial 16S rDNA sequencing. A total of 194

140

212

and 122 OTUs were detected in the stomach

foregut

midgut

and hindgut

respectively. Significant differences were found in the Sobs

ACE

Shannon

and Simpson indices among samples (

0.05). The gastrointestinal microbial community of

C. argus

consisted predominantly of Proteobacteria with either

Halomonas

Shewanella

Plesiomonas

Sphingomonas

. Fusobacteria

Firmicutes

and Bacteroidetes also existed in the gastrointestinal tracts. However

significant differences were found in the compositions of microbial community among the four regions (

0.05). Cyanobacteria and Spirochetes were significantly higher in the midgut and hindgut (

0.05). Fusobacteria and Firmicutes were dominant in the hindgut and foregut

respectively (

0.05). Proteobacteria was the lowest in the hindgut (

0.05). At genus level

Cetobacterium

and

Plesiomonas

were significantly higher in the hindgut than in the other three samples (

0.05).

Clostridium

and

Prevotella

were the highest in the midgut (

0.05).

Halomonas

Shewanella

and

Sphingomonas

were the highest in the foregut (

0.05).

Paracoccus

and

Vibrio

were the highest in the stomach. Several genera were only detected in certain regions

as follows:stomach

Paracoccus

and

Vibrio

; foregut

Halomonas

Shewanella

and

Sphingomonas

; midgut

Clostridium

and

Prevotella

; and hindgut

Cetobacterium

and

Plesiomonas

(

0.05). At the species level

Acinetobacter rhizosphaerae

was only detected in the stomach.

Prevotella copri

and

Clostridium perfring

were not detected in the foregut and midgut

respectively

whereas

Prevotella copri

and

Faecalibacterium pra

were not detected in the hindgut. These findings provide valuable information on the microbial community in each gastrointestinal region of

C. argus

. Moreover

this study indicated that microbial community was not only related to rearing environment but also to the physico-chemical characteristics of each gastrointestinal region.

关键词

Keywords

references

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Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842

DOI：10.1007/s00343-018-6292-9

摘要

Abstract

关键词

Keywords

references