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Complete genome of
Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae- Chinese Journal of Oceanology and Limnology Vol. 36, Issue 2, Pages: 528-536(2018)
- Affiliations：
1.Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
2.Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China
3.CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
- Author bio：
MAO Yunxiang, yxmao@ouc.edu.cn
- Funds：
DOI：10.1007/s00343-017-6239-6
CLC：Received：04 September 2016，
Accepted：08 September 2016，
Online First：14 September 2016，
Published：2018-03
- Accepted：
Scan QR Code
Xianghai TANG, Kuipeng XU, Xiaojuan HAN, et al. Complete genome of
Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 528-536.Xianghai TANG, Kuipeng XU, Xiaojuan HAN, et al. Complete genome of
Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 528-536. DOI： 10.1007/s00343-017-6239-6.
摘要
Abstract
Cobetia marina
is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. To better understand the role of the surface-associated lifestyle of
C. marina
and the phylogeny of the family Halomonadaceae
we sequenced the entire genome of
C. marina
JCM 21022
T
using single molecule real-time sequencing technology (SMRT) and performed comparative genomics and phylogenomics analyses. The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences
72 tRNA genes
and 21 rRNA genes. The
C. marina
JCM 21022
T
genome contained a set of crucial genes involved in surface colonization processes. The comparative genome analysis indicated the significant differences between
C. marina
JCM 21022
T
and
Cobetia amphilecti
KMM 296 (formerly named
C. marina
KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these differences
pan and core genome analysis showed similar gene functions between the two strains. The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested
including
Chromohalobacter
Halomonas
Cobetia
Kushneria
Zymobacter
and
Halotalea
.
关键词
Keywords
references
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