Intestinal microbiota of healthy and unhealthy Atlantic salmon <italic style="font-style: italic">Salmo salar</italic> L. in a recirculating aquaculture system

Chun WANG; Guoxiang SUN; Shuangshuang LI; Xian LI; Ying LIU

doi:10.1007/s00343-017-6203-5

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Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system

Biology | Updated：2023-05-19

- Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system
- Chinese Journal of Oceanology and Limnology Vol. 36, Issue 2, Pages: 414-426(2018)
- Affiliations：
  
  1.Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
  2.University of Chinese Academy of Sciences, Beijing 100049, China
  3.College of Energy and Environmental Engineering, Hebei University of Engineering, Handan 056038, China
- Author bio：
  
  LIU Ying, yinliu@qdio.ac.cn, 13953208976@163.com
- Funds：
- DOI：10.1007/s00343-017-6203-5
  CLC：
- Received：01 August 2016，
  
  Accepted：12 September 2016，
  
  Online First：02 December 2016，
  
  Published：2018-03
- Accepted：
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Chun WANG, Guoxiang SUN, Shuangshuang LI, et al. Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 414-426.
DOI：

Chun WANG, Guoxiang SUN, Shuangshuang LI, et al. Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system[J]. Chinese Journal of Oceanology and Limnology, 2018, 36(2): 414-426. DOI： 10.1007/s00343-017-6203-5.

摘要

Abstract

The present study sampled the intestinal content of healthy and unhealthy Atlantic salmon (

Salmo salar

L.)

the ambient water of unhealthy fish

and the biofilter material in the recirculating aquaculture system (RAS) to understand differences in the intestinal microbiota. The V4-V5 regions of the prokaryotic 16S rRNA genes in the samples were analyzed by MiSeq high-throughput sequencing. The fish were adults with no differences in body length or weight. Representative members of the intestinal microbiota were identified. The intestinal microbiota of the healthy fish included Proteobacteria (44.33%)

Actinobacteria (17.89%)

Bacteroidetes (15.25%)

and Firmicutes (9.11%)

among which the families Micrococcaceae and Oxalobacteraceae and genera

Sphingomonas

Streptomyces

Pedobacter

Janthinobacterium

Burkholderia

and

Balneimonas

were most abundant. Proteobacteria (70.46%)

Bacteroidetes (7.59%)

and Firmicutes (7.55%) dominated the microbiota of unhealthy fish

and Chloroflexi (2.71%)

and

Aliivibrio

and

Vibrio

as well as genera in the family Aeromonadaceae were most strongly represented. Overall

the intestinal hindgut microbiota differed between healthy and unhealthy fish. This study offers a useful tool for monitoring the health status of fish and for screening the utility of probiotics by studying the intestinal microbiota.

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Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system

DOI：10.1007/s00343-017-6203-5

摘要

Abstract

关键词

Keywords

references