Phylogeny of Saccharina and Laminaria (Laminariaceae, Laminariales, Phaeophyta) in sequence-tagged-site markers

Jieqiong Qu; Jing Zhang; Xumin Wang; Shan Chi; Cui Liu; Tao Liu

doi:10.1007/s00343-014-3134-2

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Phylogeny of Saccharina and Laminaria (Laminariaceae, Laminariales, Phaeophyta) in sequence-tagged-site markers

Updated：2023-05-16

- Phylogeny of Saccharina and Laminaria (Laminariaceae, Laminariales, Phaeophyta) in sequence-tagged-site markers
- Journal of Oceanology and Limnology Vol. 32, Issue 1, Pages: 22-33(2014)
- Affiliations：
  
  1. College of Marine Life Sciences Ocean University of China
  2. Shandong Provincial Key Laboratory of Microbial Engineering Shandong Polytechnic University
  3. Chinese Academy of Sciences Key Laboratory of Genome Sciences and Information Beijing Institute of Genomics Chinese Academy of Sciences
- Author bio：
- Funds：
- DOI：10.1007/s00343-014-3134-2
  CLC：
- Online First：21 February 2014，
  
  Published：2014
- Accepted：
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Qu, J., Zhang, J., Wang, X. et al. Phylogeny of Saccharina and Laminaria (Laminariaceae, Laminariales, Phaeophyta) in sequence-tagged-site markers., Chin. J. Ocean. Limnol. 32, 22–33 (2014). https://doi.org/10.1007/s00343-014-3134-2
DOI：

Qu, J., Zhang, J., Wang, X. et al. Phylogeny of Saccharina and Laminaria (Laminariaceae, Laminariales, Phaeophyta) in sequence-tagged-site markers., Chin. J. Ocean. Limnol. 32, 22–33 (2014). https://doi.org/10.1007/s00343-014-3134-2 DOI：

摘要

Abstract

Laminaria and Saccharina have recently been recognized as two independent clades from the former genus Laminaria. Traditional morphological taxonomy is being challenged by molecular evidence from both nucleus and plastid. Intensive work is in great demand from the perspective of genome colinearity. In this study

118 sequence-tagged site (STS) markers were screened for phylogenetic analyses

29 based on genome sequences

while 89 were based on expressed sequence tag (EST) sequences. EST-based STS marker development (29.37%) had an effi ciency twice as high as genome-sequence-based development (9.48%) as a result of high conservation of gene transcripts among the relative species. S. ochotensis

S. religiosa

S. japonica

and L. hyperborea showed great homogeneity in all 118 STS markers. Our result supports the view that the diversifi cation between the genera Saccharina and Laminaria was a more recent event and that Saccharina and Laminaria shared high phylogenetic affi nity. However

when it came to the single nucleotide polymorphism (SNP) level among the 41 SNPs

L. hyperborea owned 29 unique SNPs against 12 within the left three Saccharina species and 12 of the 13 indels were supposedly unique for L. hyperborea

indicated by its high variability. Originating from homologous ancestors

species between the recently diverged genera Laminaria and Saccharina may have taken in enough mutations at the SNP level only

in spite of different evolutionary strategies for better adaptation to the environment. Our study lays a solid foundation from a new perspective

although more accurate phylogenetic analysis is still needed to clarify the evolutionary traces between the genera Saccharina and Laminaria.

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references

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