Molecular phylogenetic analysis of dinoflagellate Scrippsiella trochoidea isolated from the East Asian waters

Xianghai Tang; Rencheng Yu; Qingchun Zhang; Yunfeng Wang; Tian Yan; Mingjiang Zhou

doi:10.1007/s00343-010-9288-7

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Molecular phylogenetic analysis of dinoflagellate Scrippsiella trochoidea isolated from the East Asian waters

Updated：2023-05-16

- Molecular phylogenetic analysis of dinoflagellate Scrippsiella trochoidea isolated from the East Asian waters
- Journal of Oceanology and Limnology Vol. 28, Issue 2, Pages: 323-328(2010)
- Affiliations：
  
  1. Key Laboratory of Marine Ecology and Environmental Sciences Institute of Oceanology Chinese Academy of Sciences
  2. Graduate School of Chinese Academy of Sciences
- Author bio：
- Funds：
- DOI：10.1007/s00343-010-9288-7
  CLC：
- Online First：20 March 2010，
  
  Published：2010
- Accepted：
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Tang, X., Yu, R., Zhang, Q. et al. Molecular phylogenetic analysis of dinoflagellate Scrippsiella trochoidea isolated from the East Asian waters., Chin. J. Ocean. Limnol. 28, 323–328 (2010). https://doi.org/10.1007/s00343-010-9288-7
DOI：

Tang, X., Yu, R., Zhang, Q. et al. Molecular phylogenetic analysis of dinoflagellate Scrippsiella trochoidea isolated from the East Asian waters., Chin. J. Ocean. Limnol. 28, 323–328 (2010). https://doi.org/10.1007/s00343-010-9288-7 DOI：

摘要

Abstract

Previous studies found intraspecific diversity in Scrippsiella trochoidea A. R. Loeblich III

a widely distributed calcareous cyst-producing dinoflagellate. In this study

three strains (ST-1

ST-D6 and ST-K) of S. trochoidea isolated from the East Asian waters were studied

together with other geographical strains

to resolve their phylogenetic relationships. For the three East Asian isolates

two highly diverse regions of nuclear-encoded ribosomal DNA (rDNA)

the 5.8S rDNA and its flanking internal transcribed spacers 1 and 2

and the 5′ portion of the large-subunit rDNA (encompassing the “D1“ and “D2” domains) were sequenced. Homologous sequences from other geographical isolates were selected from the GenBank database and the phylogenetic relationships were inferred from the molecular data of these strains. Strains of S. trochoidea were found to cluster into three major clades (STR1

STR2 and STR3)

as reported in previous studies. Two of the three strains ST-1 and ST-K

were grouped in clade STR2

the other strain

ST-D6

belonged to clade STR3. The intraspecific diversity of S. trochoidea in East Asian waters makes it necessary to carry out phylogenetic investigations in combination with data of biogeography

population dynamics

and life cycle on the ecophysiology of a region.

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references

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