The complete mitochondrial genome of <italic style="font-style: italic">Parachiloglanis hodgarti</italic> and its phylogenetic position within Sisoridae

Jiasheng LI; Ying PENG; Shufei ZHANG; Yifan LIU; Kun ZHANG; Jian CHEN; Hua ZHANG; Chi ZHANG; Bingjian LIU

doi:10.1007/s00343-021-1319-z

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The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae

Biology | Updated：2023-04-27

- The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae
- The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae
- 海洋湖沼学报（英文） 2023年41卷第1期页码：267-279
- Affiliations：
  
  1.National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan 316022, China
  2.Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa 850000, China
  3.Guangdong Provincial Key Laboratory of Fishery Ecology and Environment; South China Sea Fisheries Research Institute, Chinese Academy of Fisheries Sciences, Guangzhou 510300, China
  4.Key Laboratory of Tropical Marine Bio-resources and Ecology, Chinese Academy of Sciences, Guangzhou 510301, China
- Author bio：
  
  Chi ZHANG, E-mail: zc0891@163.com
  Bingjian LIU, E-mail: bjetbj@163.com
- Funds：
  
  the National Natural Science Foundation of China(41806156);the National Natural Science Foundation of China(31702321);the Zhejiang Provincial Natural Science Foundation of China(LY22D060001);the Zhejiang Provincial Natural Science Foundation of China(LY20C190008);the Fund of Guangdong Provincial Key Laboratory of Fishery Ecology and Environment(FEEL-2021-8);the Open Foundation from Key Laboratory of Tropical Marine Bio-resources and Ecology, Chinese Academy of Sciences(LMB20201005);the Science and Technology Project of Zhoushan(2020C21016);the Fundamental Research Funds for Zhejiang Provincial Universities and Research Institutes(2021J008);the Open Foundation from Marine Sciences in the First-Class Subjects of Zhejiang(20200201);the Open Foundation from Marine Sciences in the First-Class Subjects of Zhejiang(20200202);© Chinese Society for Oceanology and Limnology, Science Press and Springer-Verlag GmbH Germany, part of Springer Nature 2023
- DOI：10.1007/s00343-021-1319-z
  中图分类号：
- 收稿：2021-10-12，
  
  录用：2021-11-22，
  
  网络首发：2021-12-29，
  
  纸质出版：2023-01
- Accepted：
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The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. 海洋湖沼学报（英文）, 2023,41(1):267-279.

Jiasheng LI, Ying PENG, Shufei ZHANG, et al. The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. Journal of Oceanology and Limnology, 2023, 41(1): 267-279.
The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. 海洋湖沼学报（英文）, 2023,41(1):267-279. DOI： 10.1007/s00343-021-1319-z.

Jiasheng LI, Ying PENG, Shufei ZHANG, et al. The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. Journal of Oceanology and Limnology, 2023, 41(1): 267-279. DOI： 10.1007/s00343-021-1319-z.

摘要

Abstract

The complete mitogenome of

Parachiloglanis hodgarti

was sequenced and characterized

which is the first mitogenome of the genus

Parachiloglanis

within Sisoridae. The mitogenome is 16 511-bp long and included 13 protein-coding genes

22 transfer RNAs

two ribosomal RNAs

and one control region. The genome composition was A+T biased (58.64%) and exhibited a positive AT-skew (0.095) and a negative GC-skew (-0.283). Compared with other Sisoridae fishes

the characteristics of nucleotide skews

codon usage

and amino acid usage of the

P. hodgarti

mitogenome are more similar to those of non-Glyptosternoid fishes. Furthermore

the phylogenetic trees show that Sisoridae fishes fall into four major clades and

hodgarti

(Clade Ⅰ) is basal to the Sisoridae family

forming a sister clade to the Glyptosternoids (Clade Ⅳ). The topological structures constructed in this study raised doubts over the traditional classification system. These results will help better understand the features of the

P. hodgarti

mitogenome and provide a reference for further phylogenetic research on Sisoridae species.

关键词

Keywords

references

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The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae

The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae

DOI：10.1007/s00343-021-1319-z

摘要

Abstract

关键词

Keywords

references