Microbiota characteristics in <italic style="font-style: italic">Sebastes schlegelii</italic> intestine in early life stages

Yan JIANG; Xuezhou LIU; Yongjiang XU; Bao SHI; Bin WANG

doi:10.1007/s00343-019-9011-2

Your Location：

Home >

Browse articles >

Microbiota characteristics in Sebastes schlegelii intestine in early life stages

Aquaculture and Fisheries | Updated：2023-04-27

- Microbiota characteristics in Sebastes schlegelii intestine in early life stages
- Microbiota characteristics in Sebastes schlegelii intestine in early life stages
- 海洋湖沼学报（英文） 2020年38卷第1期页码：275-287
- Affiliations：
  
  1.Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture and Rural Affairs, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China
  2.Laboratory for Marine Fisheries and Food Production Processes, Pilot National Laboratory for Marine Science and Technology(Qingdao), Qingdao 266237, China
- Author bio：
  
  LIU Xuezhou, liuxz@ysfri.ac.cn
- Funds：
  
  the Central Public-interest Scientific Institution Basal Research Fund, the CAFS and the Fund of Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, China(2018HY-XKQ01-04);the Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)(2018SDKJ0501-2);the Central Public-interest Scientific Institution Basal Research Fund, YSFRI, CAFS, China(20603022018021);the China Agriculture Research System(CARS-47);the Key Project of Research and Development Plan of China(2017YFE0104400);© Chinese Society for Oceanology and Limnology, Science Press and Springer-Verlag GmbH Germany, part of Springer Nature 2020
- DOI：10.1007/s00343-019-9011-2
  中图分类号：
- 收稿：2019-01-29，
  
  录用：2019-4-3，
  
  网络首发：2019-05-03，
  
  纸质出版：2020-01
- Accepted：
Scan QR Code
Microbiota characteristics in Sebastes schlegelii intestine in early life stages[J]. 海洋湖沼学报（英文）, 2020,38(1):275-287.

Yan JIANG, Xuezhou LIU, Yongjiang XU, et al. Microbiota characteristics in Sebastes schlegelii intestine in early life stages[J]. Journal of Oceanology and Limnology, 2020, 38(1): 275-287.
Microbiota characteristics in Sebastes schlegelii intestine in early life stages[J]. 海洋湖沼学报（英文）, 2020,38(1):275-287. DOI： 10.1007/s00343-019-9011-2.

Yan JIANG, Xuezhou LIU, Yongjiang XU, et al. Microbiota characteristics in Sebastes schlegelii intestine in early life stages[J]. Journal of Oceanology and Limnology, 2020, 38(1): 275-287. DOI： 10.1007/s00343-019-9011-2.

摘要

Abstract

The structure of intestinal microbiota of black rockfish

Sebastes schlegelii

in five early development stages were determined in high throughput sequencing with Illumina MiSeq PE300 system. The relationship between intestinal microbial community and the environmental (including culture water and feed) microbiota and the abundance variation trends of core microbiota were investigated

based on which the source of some core microbiota was analyzed in this study. The results show that Proteobacteria and Firmicutes are the most dominant phyla in guts. At the genus level

there are obvious differences between the artificial breeding fish and wild adults in the intestinal microflora structure. The compositions of dominant genera are similar

although the structure of intestinal microbiota gradually changes with the growth of larvae and juveniles. The core microbiota including

Bacillus

Acinetobacter

Pseudomonas

Lactobacillus

Lactococcus

Glaciecola

Vibrio

Pseudoalteromonas

Acidovorax

and

Aliivibrio

were determined in the analysis of dominant and shared species. Compared with the water

the effect of feed microbiota on the structure of the gut microbial community is more obvious. Moreover

the trends of

Bacillus

Acinetobacter

Pseudomonas

Lactobacillus

Lactococcus

and

Glaciecola

were opposite to

Vibrio

and

Pseudoalteromonas

in the gut. The correlation analysis suggested that

Acidovorax

Glaciecola

Pseudomonas

Lactobacillus

and

Acinetobacter

might transited from mainly the parents and/or came from the fertilization process. The relative results may provide a theoretical reference for selecting the native probiotics

and supply the basic data for artificially regulating the intestinal microbiota with probiotic during early developmental stage of black rockfish.

关键词

Keywords

references

M Adhikari , D R Yadav , S W Kim , Y H Um , H S Kim , S C Lee , J Y Song , H G Kim , Y S Lee . Biological control of bacterial fruit blotch of watermelon pathogen ( Acidovorax citrulli ) with rhizosphere associated bacteria . Plant Pathology Journal , 2017 . 33 ( 2 ): 170 - 183 . .

E Alcaide , C Amaro , R Todoli , R Oltra . Isolation and characterization of Vibrio parahaemolyticus causing infection in Iberian toothcarp Aphanius iberus . Diseases of Aquatic Organisms , 1999 . 35 ( 1 ): 77 - 80 . http://d.old.wanfangdata.com.cn/NSTLQK/10.3354-dao035077/ http://d.old.wanfangdata.com.cn/NSTLQK/10.3354-dao035077/ , .

B Austin , X H Zhang . Vibrio harveyi : a significant pathogen of marine vertebrates and invertebrates . Letters in Applied Microbiology , 2006 . 43 ( 2 ): 119 - 124 . DOI: 10.1111/j.1472-765X.2006.01989.x http://doi.org/10.1111/j.1472-765X.2006.01989.x .

K S Baik , Y D Park , C N Seong , E M Kim , K S Bae , J Chun . Glaciecola nitratireducens sp. nov., isolated from seawater . International Journal of Systematic and Evolutionary Microbiology , 2006 . 56 ( 9 ): 2 185 - 2 188 . DOI: 10.1099/ijs.0.64330-0 http://doi.org/10.1099/ijs.0.64330-0 .

I Bakke , J Skjermo , T A Vo , O Vadstein . Live feed is not a major determinant of the microbiota associated with cod larvae ( Gadus morhua ) . Environmental Microbiology Reports , 2013 . 5 ( 4 ): 537 - 548 . DOI: 10.1111/1758-2229.12042 http://doi.org/10.1111/1758-2229.12042 .

G Banerjee , A K Ray . Bacterial symbiosis in the fish gut and its role in health and metabolism . Symbiosis , 2017 . 72 ( 1 ): 1 - 11 . DOI: 10.1007/s13199-016-0441-8 http://doi.org/10.1007/s13199-016-0441-8 .

S Beurmann , B Ushijima , P Videau , C M Svoboda , A M Smith , O S Rivers , G S Aeby , S M Callahan . Pseudoalteromonas piratica strain OCN003 is a coral pathogen that causes a switch from chronic to acute Montipora white syndrome in Montipora capitata . PLoS One , 2017 . 12 ( 11 ): e0188319 DOI: 10.1371/journal.pone.0188319 http://doi.org/10.1371/journal.pone.0188319 .

A M Bolger , M Lohse , B Usadel . Trimmomatic: a flexible trimmer for Illumina sequence data . Bioinformatics , 2014 . 30 ( 15 ): 2 114 - 2 120 . DOI: 10.1093/bioinformatics/btu170 http://doi.org/10.1093/bioinformatics/btu170 .

K Chantharasophon , T Warong , P Mapatsa , V Leelavatcharamas . High potential probiotic Bacillus species from gastro-intestinal tract of Nile Tilapia ( Oreochromis niloticus ) . Biotechnology , 2011 . 10 ( 6 ): 498 - 505 . DOI: 10.3923/biotech.2011.498.505 http://doi.org/10.3923/biotech.2011.498.505 .

J G Chen , J F Yang , J Xiong , Z J Mao , L Wangh . The innate immune response in Lateolabrax japonicus induced by lipopolysaccharide from Glaciecola polaris strain ARK149 (LMG21854) . Agricultural Sciences in China , 2010 . 9 ( 10 ): 1 504 - 1 511 . DOI: 10.1016/S1671-2927(09)60245-5 http://doi.org/10.1016/S1671-2927(09)60245-5 .

S J Chun , Y S Cui , S R Ko , H G Lee , A Srivastava , H M Oh , C Y Ahn . Acidovorax lacteus sp. nov., isolated from a culture of a bloom-forming cyanobacterium ( Microcystis sp.) . Antonie Van Leeuwenhoek , 2017 . 110 ( 9 ): 1 199 - 1 205 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=75b5b31f23a5f305f5e48d548f9b4681 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=75b5b31f23a5f305f5e48d548f9b4681 , .

H Chung , S J Pamp , J A Hill , N K Surana , S M Edelman , E B Troy , N C Reading , E J Villablanca , S Wang , J R Mora , Y Umesaki , D Mathis , C Benoist , D A Relman , D L Kasper . Gut immune maturation depends on colonization with a host-specific microbiota . Cell , 2012 . 149 ( 7 ): 1 578 - 1 593 . DOI: 10.1016/j.cell.2012.04.037 http://doi.org/10.1016/j.cell.2012.04.037 .

M A O Dawood , S Koshio . Recent advances in the role of probiotics and prebiotics in carp aquaculture: a review . Aquaculture , 2016 . 454 243 - 251 . DOI: 10.1016/j.aquaculture.2015.12.033 http://doi.org/10.1016/j.aquaculture.2015.12.033 .

A R Desai , M G Links , S A Collins , G S Mansfield , M D Drew , A G Van Kessel , J E Hill . Effects of plant-based diets on the distal gut microbiome of rainbow trout ( Oncorhynchus mykiss ) . Aquaculture , 2012 . 350-353 134 - 142 . DOI: 10.1016/j.aquaculture.2012.04.005 http://doi.org/10.1016/j.aquaculture.2012.04.005 .

R C Edgar , B J Haas , J C Clemente , C Quince , R Knight . UCHIME improves sensitivity and speed of chimera detection . Bioinformatics , 2011 . 27 ( 16 ): 2 194 - 2 200 . DOI: 10.1093/bioinformatics/btr381 http://doi.org/10.1093/bioinformatics/btr381 .

H W Ferguson , R O Collins , M Moore , M Coles , D D MacPhee . Pseudomonas anguilliseptica infection in farmed cod, Gadus morhua L . Journal of Fish Disease , 2004 . 27 ( 4 ): 249 - 253 . DOI: 10.1111/j.1365-2761.2004.00537.x http://doi.org/10.1111/j.1365-2761.2004.00537.x .

C Ferreira , M Veldhoen . Host and microbes date exclusively . Cell , 2012 . 149 ( 7 ): 1 428 - 1 430 . DOI: 10.1016/j.cell.2012.06.005 http://doi.org/10.1016/j.cell.2012.06.005 .

P Forsythe , J Bienenstock . Immunomodulation by commensal and probiotic bacteria . Immunological Investigations , 2010 . 39 ( 4-5 ): 429 - 448 . DOI: 10.3109/08820131003667978 http://doi.org/10.3109/08820131003667978 .

M Gacias , S Gaspari , P M G Santos , S Tamburini , M Andrade , F Zhang , N Shen , V Tolstikov , M A Kiebish , J L Dupree , V Zachariou , J C Clemente , P Casaccia . Microbiotadriven transcriptional changes in prefrontal cortex override genetic differences in social behavior . eLife , 2016 . 5 e13442 DOI: 10.7554/eLife.13442 http://doi.org/10.7554/eLife.13442 .

R L Gallo , T Nakatsuji . Microbial symbiosis with the innate immune defense system of the skin . Journal of Investigative Dermatology , 2011 . 131 ( 10 ): 1 974 - 1 980 . DOI: 10.1038/jid.2011.182 http://doi.org/10.1038/jid.2011.182 .

M Ghanbari , W Kneifel , K J Domig . A new view of the fish gut microbiome: advances from next-generation sequencing . Aquaculture , 2015 . 448 464 - 475 . DOI: 10.1016/j.aquaculture.2015.06.033 http://doi.org/10.1016/j.aquaculture.2015.06.033 .

E Hjerde , M S Lorentzen , M T G Holden , K Seeger , S Paulsen , N Bason , C Churcher , D Harris , H Norbertczak , M A Quail , S Sanders , S Thurston , J Parkhill , N P Willassen , N R Thomson . The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay . BMC Genomics , 2008 . 9 ( 1 ): 616 DOI: 10.1186/1471-2164-9-616 http://doi.org/10.1186/1471-2164-9-616 .

M T Horne , A Baxendale . The adhesion of Vibrio anguillarum to host tissues and its role in pathogenesis . Journal of Fish Diseases , 1983 . 6 ( 5 ): 461 - 471 . DOI: 10.1111/j.1365-2761.1983.tb00100.x http://doi.org/10.1111/j.1365-2761.1983.tb00100.x .

Y Jiang , Z X Liu , X Z Liu , Y J Xu , B Shi , B Wang . Structural characteristics and succession of intestinal microbiota for Paralichthys olivaceus during the early life stage . Aquaculture Research , 2019 . 50 ( 2 ): 529 - 540 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/are.13924 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/are.13924 , .

Y Jiang , Z Zhang , Y G Wang , Y Y Jing , M J Liao , X J Rong , B Li , G P Chen , H S Zhang . Effects of probiotic on microfloral structure of live feed used in larval breeding of turbot Scophthalmus maximus . Journal of Oceanology and Limnology , 2018 . 36 ( 3 ): 1 002 - 1 012 . DOI: 10.1007/s00343-018-7049-1 http://doi.org/10.1007/s00343-018-7049-1 http://www.jol343.com//EN/abstract/abstract533.shtml http://www.jol343.com//EN/abstract/abstract533.shtml , .

W H Karasov , C Martínez del Rio , E Caviedes-Vidal . Ecological physiology of diet and digestive systems . Annual Review of Physiology , 2011 . 73 69 - 93 . DOI: 10.1146/annurev-physiol-012110-142152 http://doi.org/10.1146/annurev-physiol-012110-142152 .

C Karlsen , C Vanberg , H Mikkelsen , H Sørum . Coinfection of Atlantic salmon ( Salmo salar ), by Moritella viscosa and Aliivibrio wodanis , development of disease and host colonization . Veterinary Microbiology , 2014 . 171 ( 1-2 ): 112 - 121 . DOI: 10.1016/j.vetmic.2014.03.011 http://doi.org/10.1016/j.vetmic.2014.03.011 .

P Kelly . Nutrition, intestinal defence and the microbiome . Proceedings of the Nutrition Society , 2010 . 69 ( 2 ): 261 - 268 . DOI: 10.1017/S0029665110000108 http://doi.org/10.1017/S0029665110000108 .

Y R Kim , E Y Kim , S Y Choi , M T Hossain , R K Oh , W S Heo , J M Lee , Y C Cho , I S Kong . Effect of a probiotic strain, Enterococcus faecium , on the immune responses of olive flounder ( Paralichthys olivaceus ) . Journal of Microbiology and Biotechnology , 2013 . 22 ( 4 ): 526 - 529 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=JAKO201224237129569 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=JAKO201224237129569 , .

Y Kitani , N Kikuchi , G H Zhang , S Ishizaki , K Shimakura , K Shiomi , Y Nagashima . Antibacterial action of L-amino acid oxidase from the skin mucus of rockfish Sebastes schlegelii . Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology , 2008 . 149 ( 2 ): 394 - 400 . DOI: 10.1016/j.cbpb.2007.10.013 http://doi.org/10.1016/j.cbpb.2007.10.013 .

A Kozińska , E Paździor , A Pękala , W Niemczuk . Acinetobacter johnsonii and Acinetobacter lwoffii -the emerging fish pathogens . Bulletin of the Veterinary Institute in Pulawy , 2014 . 58 ( 2 ): 193 - 199 . DOI: 10.2478/bvip-2014-0029 http://doi.org/10.2478/bvip-2014-0029 .

Y Leyton , C Sayes , C Mejias , M Abarca , R Wilson , C Riquelme . Increased larval survival of Seriola lalandi using Pseudoalteromonas sp . as probiotics. Revista de Biología Marina Y Oceanografía , 2017 . 52 ( 1 ): 95 - 101 . DOI: 10.4067/S0718-19572017000100007 http://doi.org/10.4067/S0718-19572017000100007 .

J Li , J L Cao , X Wang , N Liu , W M Wang , Y Luo . Acinetobacter pittii , an emerging new multi-drug resistant fish pathogen isolated from diseased blunt snout bream ( Megalobrama amblycephala Yih) in China . Applied Microbiology and Biotechnology , 2017a . 101 ( 16 ): 6 459 - 6 471 . DOI: 10.1007/s00253-017-8392-4 http://doi.org/10.1007/s00253-017-8392-4 .

X M Li , Y H Yu , W S Feng , Q Y Yan , Y C Gong . Host species as a strong determinant of the intestinal microbiota of fish larvae . Journal of Microbiology , 2012 . 50 ( 1 ): 29 - 37 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=0d9a44840c0b4938d8554038f5180280 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=0d9a44840c0b4938d8554038f5180280 , .

Y X Li , P Yang , Y J Zhang , Q H Ai , W Xu , W B Zhang , Y A Zhang , H B Hu , J T Liu , K S Mai . Effects of dietary glycinin on the growth performance, digestion, intestinal morphology and bacterial community of juvenile turbot, Scophthalmus maximus L . Aquaculture , 2017b . 479 125 - 133 . DOI: 10.1016/j.aquaculture.2017.05.008 http://doi.org/10.1016/j.aquaculture.2017.05.008 .

P C Liu , J Y Lin , P T Hsiao , K K Lee . Isolation and characterization of pathogenic Vibrio alginolyticus from diseased cobia Rachycentron canadum . Journal of Basic Microbiology , 2004 . 44 ( 1 ): 23 - 28 . DOI: 10.1002/jobm.200310316 http://doi.org/10.1002/jobm.200310316 .

Y Liu , N Q Li , X P Zhao , B Yue , S W He , Z X Gao , S Zhou , M Zhang . A C-type lectin that inhibits bacterial infection and facilitates viral invasion in black rockfish, Sebastes schlegelii . Fish & Shellfish Immunology , 2016 . 57 309 - 317 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=661f41824fbd1254971c0b4390c473ce http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=661f41824fbd1254971c0b4390c473ce , .

S López-Romalde , B Magariños , S Nuñez , A E Toranzo , J L Romalde . Phenotypic and genetic characterization of Pseudomonas anguilliseptica strains isolated from fish . Journal of Aquatic Animal Health , 2003 . 15 ( 1 ): 39 - 47 . DOI: 10.1577/1548-8667(2003)015<0039:PAGCOP>2.0.CO;2 http://doi.org/10.1577/1548-8667(2003)015<0039:PAGCOP>2.0.CO;2 .

III J P Lynch , G G Zhanel , N M Clark . Infections due to Acinetobacter baumannii in the ICU: treatment Options . Seminars in Respiratory and Critical Care Medicine , 2017 . 38 ( 3 ): 311 - 325 . DOI: 10.1055/s-0037-1599225 http://doi.org/10.1055/s-0037-1599225 .

H L Macpherson , Ø Bergh , T H Birkbeck . An aerolysinlike enterotoxin from Vibrio splendidus may be involved in intestinal tract damage and mortalities in turbot, Scophthalmus maximus (L.), and cod, Gadus morhua L., larvae . Journal of Fish Diseases , 2012 . 35 ( 2 ): 153 - 167 . .

G E Magi , S Lopez-Romalde , B Magariños , J Lamas , A E Toranzo , J L Romalde . Experimental Pseudomonas anguilliseptica infection in turbot Psetta maxima (L.): a histopathological and immunohistochemical study . European Journal of Histochemistry , 2009 . 53 ( 2 ): e9 DOI: 10.4081/ejh.2009.e9 http://doi.org/10.4081/ejh.2009.e9 .

E Muñoz-Atienza , C Araújo , S Magadán , P E Hernández , C Herranz , Y Santos , L M Cintas . In vitro and in vivo evaluation of lactic acid bacteria of aquatic origin as probiotics for turbot ( Scophthalmus maximus L.) farming . Fish & Shellfish Immunology , 2014 . 41 ( 2 ): 570 - 580 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=ea8f543a2454e080461a1fe02d5ab7e2 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=ea8f543a2454e080461a1fe02d5ab7e2 , .

J K Nicholson , E Holmes , J Kinross , R Burcelin , G Gibson , W Jia , S Pettersson . Host-gut microbiota metabolic interactions . Science , 2012 . 336 ( 6086 ): 1 262 - 1 267 . DOI: 10.1126/science.1223813 http://doi.org/10.1126/science.1223813 .

C W Nossa , W E Oberdorf , L Y Yang , J A Aas , B J Paster , T Z DeSantis , E L Brodie , D Malamud , M A Poles , Z H Pei . Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome . World Journal of Gastroenterology , 2010 . 16 ( 33 ): 4 135 - 4 144 . DOI: 10.3748/wjg.v16.i33.4135 http://doi.org/10.3748/wjg.v16.i33.4135 .

A Ntranos , P Casaccia . The Microbiome-gut-behavior axis: crosstalk between the gut microbiome and oligodendrocytes modulates behavioral responses . Neurotherapeutics , 2018 . 15 ( 1 ): 31 - 35 . DOI: 10.1007/s13311-017-0597-9 http://doi.org/10.1007/s13311-017-0597-9 .

T Pérez , J L Balcázar , I Ruiz-Zarzuela , N Halaihel , D Vendrell , I de Blas , J L Múzquiz . Host-microbiota interactions within the fish intestinal ecosystem . Mucosal Immunology , 2010 . 3 ( 4 ): 355 - 360 . DOI: 10.1038/mi.2010.12 http://doi.org/10.1038/mi.2010.12 .

T Pérez-Sánchez , I Ruiz-Zarzuela , I de Blas , J L Balcázar . Probiotics in aquaculture: a current assessment . Reviews in Aquaculture , 2014 . 6 ( 3 ): 133 - 146 . DOI: 10.1111/raq.12033 http://doi.org/10.1111/raq.12033 .

G Y Qian , Z R Xu . Effect of polysaccharide extracted from Glaciecola polaris on the protection of mouse macrophages from oxidative injury . Bioresource Technology , 2007 . 98 ( 1 ): 202 - 206 . DOI: 10.1016/j.biortech.2005.12.004 http://doi.org/10.1016/j.biortech.2005.12.004 .

C Quast , E Pruesse , P Yilmaz , J Gerken , T Schweer , P Yarza , J Peplies , F O Glöckner . The SILVA ribosomal RNA gene database project: improved data processing and web-based tools . Nucleic Acids Research , 2013 . 41 ( D1 ): D590 - D596 . http://d.old.wanfangdata.com.cn/OAPaper/oai_pubmedcentral.nih.gov_3531112 http://d.old.wanfangdata.com.cn/OAPaper/oai_pubmedcentral.nih.gov_3531112 , .

M R K Reddy , S A Mastan . Emerging Acinetobacter schindleri in red eye infection of Pangasius sutchi . African Journal of Biotechnology , 2013 . 12 ( 50 ): 6 992 - 6 996 . .

D Reyon , S Q Tsai , C Khayter , J A Foden , J D Sander , J K Joung . FLASH assembly of TALENs for high-throughput genome editing . Nature Biotechnology , 2012 . 30 ( 5 ): 460 - 465 . DOI: 10.1038/nbt.2170 http://doi.org/10.1038/nbt.2170 .

G P Richards , M A Watson , D S Needleman , J Uknalis , E F Boyd , J P Fay . Mechanisms for Pseudoalteromonas piscicida -induced killing of vibrios and other bacterial pathogens . Applied and Environmental Microbiology , 2017 . 83 ( 11 ): e00175 DOI: 10.1128/AEM.00175-17 http://doi.org/10.1128/AEM.00175-17 .

E Ringø , R E Olsen , T M Mayhew , R Myklebust . Electron microscopy of the intestinal microflora of fish . Aquaculture , 2003 . 227 ( 1-4 ): 395 - 415 . DOI: 10.1016/j.aquaculture.2003.05.001 http://doi.org/10.1016/j.aquaculture.2003.05.001 .

T Rognes , T Flouri , B Nichols , C Quince , F Mahé . VSEARCH: a versatile open source tool for metagenomics . PeerJ , 2016 . 4 e2584 DOI: 10.7717/peerj.2584 http://doi.org/10.7717/peerj.2584 .

L M Sanchez , W R Wong , R M Riener , C J Schulze , R G Linington . Examining the fish microbiome: vertebratederived bacteria as an environmental niche for the discovery of unique marine natural products . PLoS One , 2012 . 7 ( 5 ): e35398 DOI: 10.1371/journal.pone.0035398 http://doi.org/10.1371/journal.pone.0035398 .

S K B Shabat , G Sasson , A Doron-faigenboim , T Durman , S Yaacoby , M E Berg Miller , B A White , N Shterzer , I Mizrahi . Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants . The ISME Journal , 2016 . 10 ( 12 ): 2 958 - 2 972 . DOI: 10.1038/ismej.2016.62 http://doi.org/10.1038/ismej.2016.62 .

P Smith , M P Hiney , O B Samuelsen . Bacterial resistance to antimicrobial agents used in fish farming: a critical evaluation of method and meaning . Annual Review of Fish Diseases , 1994 . 4 273 - 313 . DOI: 10.1016/0959-8030(94)90032-9 http://doi.org/10.1016/0959-8030(94)90032-9 .

K E Sullam , S D Essinger , C A Lozupone , M P O'Connor , G L Rosen , R Knight , S S Kilham , J A Russell . Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis . Molecular Ecology , 2012 . 21 ( 13 ): 3 363 - 3 378 . DOI: 10.1111/j.1365-294X.2012.05552.x http://doi.org/10.1111/j.1365-294X.2012.05552.x .

P Swain , S K Nayak , P K Nanda , S Dash . Biological effects of bacterial lipopolysaccharide (endotoxin) in fish: a review . Fish & Shellfish Immunology , 2008 . 25 ( 3 ): 191 - 201 . http://d.old.wanfangdata.com.cn/NSTLQK/10.1016-j.fsi.2008.04.009/ http://d.old.wanfangdata.com.cn/NSTLQK/10.1016-j.fsi.2008.04.009/ , .

S Tanaka , T Kobayashi , P Songjinda , A Tateyama , M Tsubouchi , C Kiyohara , T Shirakawa , K Sonomoto , J Nakayama . Influence of antibiotic exposure in the early postnatal period on the development of intestinal microbiota . FEMS Immunology & Medical Microbiology , 2009 . 56 ( 1 ): 80 - 87 . http://d.old.wanfangdata.com.cn/NSTLQK/10.1111-j.1574-695X.2009.00553.x/ http://d.old.wanfangdata.com.cn/NSTLQK/10.1111-j.1574-695X.2009.00553.x/ , .

M C Urdaci , P Bressollier , I Pinchuk . Bacillus clausii probiotic strains: antimicrobial and immunomodulatory activities . Journal of Clinical Gastroenterology , 2004 . 38 ( S6 ): S86 - S90 . http://d.old.wanfangdata.com.cn/NSTLQK/NSTL_QKJJ02976856/ http://d.old.wanfangdata.com.cn/NSTLQK/NSTL_QKJJ02976856/ , .

L Verschuere , G Rombaut , P Sorgeloos , W Verstraete . Probiotic bacteria as biological control agents in aquaculture . Microbiology and Molecular Biology Reviews , 2000 . 64 ( 4 ): 655 - 671 . DOI: 10.1128/MMBR.64.4.655-671.2000 http://doi.org/10.1128/MMBR.64.4.655-671.2000 .

Q Wang , G M Garrity , J M Tiedje , J R Cole . Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy . Applied and Environmental Microbiology , 2007 . 73 ( 16 ): 5 261 - 5 267 . DOI: 10.1128/AEM.00062-07 http://doi.org/10.1128/AEM.00062-07 .

D Wong , T B Nielsen , R A Bonomo , P Pantapalangkoor , B Luna , B Spellberg . Clinical and pathophysiological overview of Acinetobacter infections: a century of challenges . Clinical Microbiology Reviews , 2017 . 30 ( 1 ): 409 - 447 . .

L C Yan , B S Hu , G Chen , M Zhao , R R Walcott . Further evidence of cucurbit host specificity among Acidovorax citrulli groups based on a detached melon fruit pathogenicity assay . Phytopathology , 2017 . 107 ( 11 ): 1 305 - 1 311 . DOI: 10.1094/PHYTO-11-16-0416-R http://doi.org/10.1094/PHYTO-11-16-0416-R .

L Ye , J Amberg , D Chapman , M Gaikowski , W T Liu . Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish . The ISME Journal , 2014 . 8 ( 3 ): 541 - 551 . DOI: 10.1038/ismej.2013.181 http://doi.org/10.1038/ismej.2013.181 .

Z G Zhang , D M Xu , L Wang , J J Hao , J F Wang , X Zhou , W W Wang , Q Qiu , X D Huang , J W Zhou , R J Long , F Q Zhao , P Shi . Convergent evolution of rumen microbiomes in high-altitude mammals . Current Biology , 2016 . 26 ( 14 ): 1 873 - 1 879 . DOI: 10.1016/j.cub.2016.05.012 http://doi.org/10.1016/j.cub.2016.05.012 .

Y C Zhao , L Yuan , J L Wan , Z X Sun , Y Y Wang , H S Sun . Effects of potential probiotic Bacillus cereus EN25 on growth, immunity and disease resistance of juvenile sea cucumber Apostichopus japonicus . Fish & Shellfish Immunology , 2016 . 49 237 - 242 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=42530b07d43be945eaeeda1548a7d3f7 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=42530b07d43be945eaeeda1548a7d3f7 , .

S Ziaei-Nejad , M H Rezaei , G A Takami , D L Lovett , A R Mirvaghefi , M Shakouri . The effect of Bacillus spp. bacteria used as probiotics on digestive enzyme activity, survival and growth in the Indian white shrimp Fenneropenaeus indicus . Aquaculture , 2006 . 252 ( 2-4 ): 516 - 524 . DOI: 10.1016/j.aquaculture.2005.07.021 http://doi.org/10.1016/j.aquaculture.2005.07.021 .

I Zorrilla , S Arijo , M Chabrillon , P Diaz , E Martinez-Manzanares , M C Balebona , M A Moriñigo . Vibrio species isolated from diseased farmed sole, Solea senegalensis (Kaup), and evaluation of the potential virulence role of their extracellular products . Journal of Fish Diseases , 2003 . 26 ( 2 ): 103 - 108 . DOI: 10.1046/j.1365-2761.2003.00437.x http://doi.org/10.1046/j.1365-2761.2003.00437.x .

浏览量

Downloads

CSCD

文章被引用时，请邮件提醒。

Submit

工具集

关联资源

Genome-wide characterization of mapk gene family in black rockfish Sebastes schlegelii and their expression patterns against Edwardsiella piscicida infection

Shell characterization and effects on cavity volume of wild Jinjiang oyster Crassostrea ariakensis in different estuaries of China

Expression profile of long non-coding RNAs in the intestine of black rockfish Sebastes schlegelii in response to Edwardsiella tarda infection

Relationships between body weight and other morphological traits in young sea cucumbers Apostichopus japonicas

Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system

Microbiota characteristics in Sebastes schlegelii intestine in early life stages

Microbiota characteristics in Sebastes schlegelii intestine in early life stages

DOI：10.1007/s00343-019-9011-2

摘要

Abstract

关键词

Keywords

references