Comparative analysis of mitochondrial genome of a deepsea crab <italic style="font-style: italic">Chaceon granulates</italic> reveals positive selection and novel genetic features

Bo ZHANG; Yingying WU; Xin WANG; Wei JIANG; Jianping YIN; Qiang LIN

doi:10.1007/s00343-019-8364-x

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Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features

Biology | Updated：2023-04-27

- Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features
- Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features
- 海洋湖沼学报（英文） 2020年38卷第2期页码：427-437
- Affiliations：
  
  1.Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510275, China
  2.Institution of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences, Guangzhou 510275, China
  3.University of Chinese Academy of Sciences, Beijing 100049, China
  4.Beijing Advanced Sciences and Innovation Center of Chinese Academy of Sciences, Beijing 100049, China
  5.Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Author bio：
  
  LIN Qiang, E-mail:linqiang@scsio.ac.cn
- Funds：
  
  the Strategic Priority Research Program of Chinese Academy of Sciences(XDA13020103);the Strategic Priority Research Program of Chinese Academy of Sciences(XDA19060301);the National Science & Technology Fundamental Resources Investigation Program of China(2018FY100106);the National Key Research and Development Program "Marine Environment Security Project"(2017YFC0506302);the National Key Research and Development Program "Marine Environment Security Project"(2018YFC1406503);© Chinese Society for Oceanology and Limnology, Science Press and Springer-Verlag GmbH Germany, part of Springer Nature 2020
- DOI：10.1007/s00343-019-8364-x
  中图分类号：
- 收稿：2018-12-18，
  
  录用：2019-4-4，
  
  网络首发：2019-06-12，
  
  纸质出版：2020-03
- Accepted：
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Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features[J]. 海洋湖沼学报（英文）, 2020,38(2):427-437.

Bo ZHANG, Yingying WU, Xin WANG, et al. Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features[J]. Journal of Oceanology and Limnology, 2020, 38(2): 427-437.
Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features[J]. 海洋湖沼学报（英文）, 2020,38(2):427-437. DOI： 10.1007/s00343-019-8364-x.

Bo ZHANG, Yingying WU, Xin WANG, et al. Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features[J]. Journal of Oceanology and Limnology, 2020, 38(2): 427-437. DOI： 10.1007/s00343-019-8364-x.

摘要

Abstract

Deep-sea organisms survive in an extremely harsh environment. There must be some genetic adaptation mechanisms for them. We systematically characterized and compared the complete mitochondrial genome (mitogenome) of a deep-sea crab (

Chaceon granulates

) with those of shallow crabs. The mitogenome of the crab was 16 126 bp in length

and encoded 37 genes as most of a metazoan mitogenome

including 13 protein-coding genes (PCGs)

22 transfer RNA (

tRNA

) genes

and 2 ribosomal RNA (

rRNA

) genes. The gene arrangement and orientation was conserved in the crabs. However

a unique mitogenome element regulator

the origin of light-strand replication (OL)

was firstly predicted in the present crab mitogenome. In addition

further positive selection analysis showed that two residues (33S in

ND3

and 502I in

ND5

) in

C. granulates

mitogenome were positively selected

indicated the selective evolution of the deep-sea crab. Therefore

the mitogenome of deep-sea

C. granulates

showed a unique OL element and positive selection. These special features would influence the mitochondrial energy metabolism

and be involved in the adaptation of deepsea environment

such as oxygen deficits and low temperatures.

关键词

Keywords

references

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Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features

Comparative analysis of mitochondrial genome of a deepsea crab Chaceon granulates reveals positive selection and novel genetic features

DOI：10.1007/s00343-019-8364-x

摘要

Abstract

关键词

Keywords

references