

FOLLOWUS
1.Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
2.Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266000, China
3.University of Chinese Academy of Sciences, Beijing 100049, China
WANG Hongxia, E-mail:hxwang@qdio.ac.cn
收稿:2018-11-19,
录用:2019-3-25,
网络首发:2019-08-05,
纸质出版:2020-03
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Heritability of resistance-related gene expression traits and their correlation with body size of clam
Fengjuan JIANG, Xin YUE, Shujing ZHANG, et al. Heritability of resistance-related gene expression traits and their correlation with body size of clam
Heritability of resistance-related gene expression traits and their correlation with body size of clam
Fengjuan JIANG, Xin YUE, Shujing ZHANG, et al. Heritability of resistance-related gene expression traits and their correlation with body size of clam
Gene expression variation can be considered as a phenotype
and it plays an important role in both acclimation and adaption. However
genetic variation of gene expression received much less attention than traditional commercial traits in aquaculture. To estimate the genetic variation and heritability of gene transcription in clam
Meretrix petechialis
five
Vibrio
resistance-related genes were selected for gene expression analysis in the digestive gland
and an animal linear model was used to analyze data from quantitative real-time PCR (qRT-PCR). Among the five genes
BIRC7
showed significant additive genetic variations
the heritability of this gene of 12-month- and 15-month-old clams were 0.84±0.32 and 0.91±0.34
respectively. The heritability of other four genes (
Bax
NFIL3
Big
-
Def
and
CTL9
) expression were low-tomoderate but not significantly expressed. Additionally
no significant phenotypic and genetic correlations between the
BIRC7
transcription trait and body size were detected. This study highlights that certain gene expression variation is heritable and provides a reference for indirect selection of
M. petechialis
with high
Vibrio
resistance.
J Antonello , C Massault , R Franch , C Haley , C Pellizzari , G Bovo , T Patarnello , D J De Koning , L Bargelloni . Estimates of heritability and genetic correlation for body length and resistance to fish pasteurellosis in the gilthead sea bream ( Sparus aurata L . ). Aquaculture , 2009 . 298 ( 1-2 ): 29 - 35 . DOI: 10.1016/j.aquaculture.2009.10.022 http://doi.org/10.1016/j.aquaculture.2009.10.022 .
T Aykanat , J W Heath , B Dixon , D D Heath . Additive, non-additive and maternal effects of cytokine transcription in response to immunostimulation with Vibrio vaccine in Chinook salmon ( Oncorhynchus tshawytscha ) . Immunogenetics , 2012 . 64 ( 9 ): 691 - 703 . DOI: 10.1007/s00251-012-0624-2 http://doi.org/10.1007/s00251-012-0624-2 .
J F Ayroles , M A Carbone , E A Stone , K W Jordan , R F Lyman , M M Magwire , S M Rollmann , L H Duncan , F Lawrence , R R Anholt , T F Mackay . Systems genetics of complex traits in Drosophila melanogaster . Nature Genetics , 2009 . 41 ( 3 ): 299 - 307 . DOI: 10.1038/ng.332 http://doi.org/10.1038/ng.332 .
R Bangera , J Ødegård , A K Præbel , A Mortensen , H M Nielsen . Genetic correlations between growth rate and resistance to vibriosis and viral nervous necrosis in Atlantic cod ( Gadus morhua L) . Aquaculture , 2011 . 317 ( 1-4 ): 67 - 73 . DOI: 10.1016/j.aquaculture.2011.04.018 http://doi.org/10.1016/j.aquaculture.2011.04.018 .
P Berg , M Henryon . Selection response under alternative mating designs in fish . Proc. Adv. Anim. Breed. Gen. , 1999 . 13 297 - 300 . http://cn.bing.com/academic/profile?id=e95bb497d67ee8933241dd10cf52c31e&encoded=0&v=paper_preview&mkt=zh-cn http://cn.bing.com/academic/profile?id=e95bb497d67ee8933241dd10cf52c31e&encoded=0&v=paper_preview&mkt=zh-cn , .
S C Bishop , J A Woolliams . Genomics and disease resistance studies in livestock . Livestock Science , 2014 . 166 190 - 198 . DOI: 10.1016/j.livsci.2014.04.034 http://doi.org/10.1016/j.livsci.2014.04.034 .
K B Brokordt , R C González , W J Farías , F M Winkler . Potential response to selection of HSP70 as a component of innate immunity in the abalone Haliotis rufescens . PLoS One , 2015 . 10 ( 11 ): e0141959 DOI: 10.1371/journal.pone.0141959 http://doi.org/10.1371/journal.pone.0141959 .
V G Cheung , R S Spielman . The genetics of variation in gene expression . Nature Genetics , 2002 . 32 ( S4 ): 522 - 525 . DOI: 10.1038/ng1036 http://doi.org/10.1038/ng1036 .
D L Crawford , D A Powers . Evolutionary adaptation to different thermal environments via transcriptional regulation . Molecular Biology and Evolution , 1992 . 9 ( 5 ): 806 - 813 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=HighWire000002504942 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=HighWire000002504942 , .
A L Dixon , L M Liang , M F Moffatt , W Chen , S Heath , K C C Wong , J Taylor , E Burnett , I Gut , M Farrall , G M Lathrop , G R Abecasis , W O Cookson . A genome-wide association study of global gene expression . Nature Genetics , 2007 . 39 ( 10 ): 1 202 - 1 207 . DOI: 10.1038/ng2109 http://doi.org/10.1038/ng2109 .
C R Engwerda , P M Kaye . Organ-specific immune responses associated with infectious disease . Immunology Today , 2000 . 21 ( 2 ): 73 - 78 . DOI: 10.1016/S0167-5699(99)01549-2 http://doi.org/10.1016/S0167-5699(99)01549-2 .
M L Evans , B D Neff . Non-additive genetic effects contribute to larval spinal deformity in two populations of Chinook salmon ( Oncorhynchus tshawytscha ) . Aquaculture , 2009 . 296 ( 1-2 ): 169 - 173 . DOI: 10.1016/j.aquaculture.2009.08.018 http://doi.org/10.1016/j.aquaculture.2009.08.018 .
R Flores-Mara , F H Rodríguez , R Bangera , J P Lhorente , R Neira , S Newman , J M Yáñez . Resistance against infectious pancreatic necrosis exhibits significant genetic variation and is not genetically correlated with harvest weight in rainbow trout ( Oncorhynchus mykiss ) . Aquaculture , 2017 . 479 155 - 160 . DOI: 10.1016/j.aquaculture.2017.05.042 http://doi.org/10.1016/j.aquaculture.2017.05.042 .
X G Gao , C B He , H Liu , H J Li , D Zhu , S L Cai , Y Xia , Y Wang , Z Yu . Intracellular Cu/Zn superoxide dismutase(Cu/Zn-SOD) from hard clam Meretrix meretrix :its cDNA cloning, mRNA expression and enzyme activity . Molecular Biology Reports , 2012 . 39 ( 12 ): 10 713 - 10 722 . DOI: 10.1007/s11033-012-1962-8 http://doi.org/10.1007/s11033-012-1962-8 .
Y Gilad , S A Rifkin , J K Pritchard . Revealing the architecture of gene regulation:the promise of eQTL studies . Trends in Genetics , 2008 . 24 ( 8 ): 408 - 415 . DOI: 10.1016/j.tig.2008.06.001 http://doi.org/10.1016/j.tig.2008.06.001 .
Gilmour A R, Gogel B, Cullis B, Thompson R, Butler D. 2009.ASReml User Guide Release 3.0. VSN International Ltd., Hemel Hempstead, UK.
X He , A L S Houde , T E Pitcher , D D Heath . Genetic architecture of gene transcription in two Atlantic salmon( Salmo salar ) populations . Heredity (Edinb) , 2017 . 119 ( 2 ): 117 - 124 . DOI: 10.1038/hdy.2017.24 http://doi.org/10.1038/hdy.2017.24 .
D Houle , D R Govindaraju , S Omholt . Phenomics:the next challenge . Nature Reviews Genetics , 2010 . 11 ( 12 ): 855 - 866 . DOI: 10.1038/nrg2897 http://doi.org/10.1038/nrg2897 .
F J Jiang , H X Wang , X Yue , S J Zhang , B Z Liu . Integrating the Vibrio -resistance phenotype and gene expression data for discovery of markers used for resistance evaluation in the clam Meretrix petechialis . Aquaculture , 2018 . 482 130 - 136 . DOI: 10.1016/j.aquaculture.2017.09.033 http://doi.org/10.1016/j.aquaculture.2017.09.033 .
Jiang F J, Yue X, Wang H X, Liu B Z. 2017. Transcriptome profiles of the clam Meretrix petechialis hepatopancreas in response to Vibrio infection. Fish & Shellfish Immunology, 62: 175-183.
C Langevin , M Blanco , S A Martin , L Jouneau , J F Bernardet , A Houel , A Lunazzi , E Duchaud , C Michel , E Quillet , P Boudinot . Transcriptional responses of resistant and susceptible fish clones to the bacterial pathogen Flavobacterium psychrophilum . PLoS One , 2012 . 7 ( 6 ): e39126 DOI: 10.1371/journal.pone.0039126 http://doi.org/10.1371/journal.pone.0039126 .
M D Lavine , M R Strand . Insect hemocytes and their role in immunity . Insect Biochemistry and Molecular Biology , 2002 . 32 ( 10 ): 1 295 - 1 309 . DOI: 10.1016/S0965-1748(02)00092-9 http://doi.org/10.1016/S0965-1748(02)00092-9 .
E H Leder , R J McCairns , T Leinonen , J M Cano , H M Viitaniemi , M Nikinmaa , C R Primmer , J Merilä . The evolution and adaptive potential of transcriptional variation in sticklebacks——signatures of selection and widespread heritability . Molecular Biology and Evolution , 2015 . 32 ( 3 ): 674 - 689 . DOI: 10.1093/molbev/msu328 http://doi.org/10.1093/molbev/msu328 .
B B Liang , F J Jiang , S J Zhang , X Yue , H X Wang , B Z Liu . Genetic variation in vibrio resistance in the clam Meretrix petechialis under the challenge of Vibrio parahaemolyticus . Aquaculture , 2017 . 468 458 - 463 . DOI: 10.1016/j.aquaculture.2016.10.037 http://doi.org/10.1016/j.aquaculture.2016.10.037 .
B Z Liu , B Dong , B J Tang , T Zhang , J H Xiang . Effect of stocking density on growth, settlement and survival of clam larvae, Meretrix meretrix . Aquaculture , 2006 . 258 ( 1-3 ): 344 - 349 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=7475c311f3a1fbfd9b1766cf1d0083d3 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=7475c311f3a1fbfd9b1766cf1d0083d3 , .
D Marancik , G T Gao , B Paneru , H Ma , A G Hernandez , M Salem , J B Yao , Y Palti , G D Wiens . Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum . Front Genetiers , 2014 . 5 453 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=Doaj000004607407 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=Doaj000004607407 , .
Q Nie , X Yue , X L Chai , H X Wang , B Z Liu . Three vibrio-resistance related EST-SSR markers revealed by selective genotyping in the clam Meretrix meretrix . Fish& Shellfish Immunology , 2013 . 35 ( 2 ): 421 - 428 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=9ab6995b06ddc89de5a3263824b846e4 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=9ab6995b06ddc89de5a3263824b846e4 , .
Q Nie , X Yue , B Z Liu . Development of Vibrio spp. infection resistance related SNP markers using multiplex SNaPshot genotyping method in the clam Meretrix meretrix . Fish & Shellfish Immunology , 2015 . 43 ( 2 ): 469 - 476 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=553dc337e7e5e5f1b955ed1689bbf360 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=553dc337e7e5e5f1b955ed1689bbf360 , .
E Normandeau , J A Hutchings , D J Fraser , L Bernatchez . Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon . Evolutionary Applications , 2009 . 2 ( 4 ): 489 - 503 . DOI: 10.1111/j.1752-4571.2009.00074.x http://doi.org/10.1111/j.1752-4571.2009.00074.x .
M W Pfaffl . A new mathematical model for relative quantification in real-time RT-PCR . Nucleic Acids Research , 2001 . 29 ( 9 ): e45 DOI: 10.1093/nar/29.9.e45 http://doi.org/10.1093/nar/29.9.e45 .
J E Powell , A K Henders , A F McRae , J Kim , G Hemani , N G Martin , E T Dermitzakis , G Gibson , G W Montgomery , P M Visscher . Congruence of additive and nonadditive effects on gene expression estimated from pedigree and SNP data . PLoS Genetics , 2013 . 9 ( 5 ): e1003502 DOI: 10.1371/journal.pgen.1003502 http://doi.org/10.1371/journal.pgen.1003502 .
F E Reyes-López , J S Romeo , E Vallejos-Vidal , S Reyes-Cerpa , A M Sandino , L Tort , S Mackenzie , M Imarai . Differential immune gene expression profiles in susceptible and resistant full-sibling families of Atlantic salmon ( Salmo salar ) challenged with infectious pancreatic necrosis virus (IPNV) . Developmental & Comparative Immunology , 2015 . 53 ( 1 ): 210 - 221 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=ab176a76c81f1c88fc021bbad0011f39 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=ab176a76c81f1c88fc021bbad0011f39 , .
C Roberge , H Guderley , L Bernatchez . Genomewide identification of genes under directional selection:gene transcription Q ST scan in diverging Atlantic salmon subpopulations . Genetics , 2007 . 177 ( 2 ): 1 011 - 1 022 . DOI: 10.1534/genetics.107.073759 http://doi.org/10.1534/genetics.107.073759 .
N Robinson , B Hayes . Modelling the use of gene expression profiles with selective breeding for improved disease resistance in Atlantic salmon ( Salmo salar ) . Aquaculture , 2008 . 285 ( 1-4 ): 38 - 46 . DOI: 10.1016/j.aquaculture.2008.08.016 http://doi.org/10.1016/j.aquaculture.2008.08.016 .
D Robledo , J B Taggart , J H Ireland , B J McAndrew , W G Starkey , C S Haley , A Hamilton , D R Guy , J C Mota-Velasco , A A Gheyas , A E Tinch , D W Verner-Jeffreys , R K Paley , G S Rimmer , I J Tew , S C Bishop , J E Bron , R D Houston . Gene expression comparison of resistant and susceptible Atlantic salmon fry challenged with Infectious Pancreatic Necrosis virus reveals a marked contrast in immune response . BMC Genomics , 2016 . 17 279 DOI: 10.1186/s12864-016-2600-y http://doi.org/10.1186/s12864-016-2600-y .
T Röszer . The invertebrate midintestinal gland("hepatopancreas") is an evolutionary forerunner in the integration of immunity and metabolism . Cell and Tissue Research , 2014 . 358 ( 3 ): 685 - 695 . DOI: 10.1007/s00441-014-1985-7 http://doi.org/10.1007/s00441-014-1985-7 .
J T Silverstein , R L Vallejo , Y Palti , T D Leeds , III C E Rexroad , T J Welch , G D Wiens , V Ducrocq . Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth . Journal of Animal Science , 2009 . 87 ( 3 ): 860 - 867 . DOI: 10.2527/jas.2008-1157 http://doi.org/10.2527/jas.2008-1157 .
J N Tedeschi , W J Kennington , J L Tomkins , O Berry , S Whiting , M G Meekan , N J Mitchell . Heritable variation in heat shock gene expression:a potential mechanism for adaptation to thermal stress in embryos of sea turtles . Proceedings Biological Sciences , 2016 . 283 ( 1822 ): 20152320 DOI: 10.1098/rspb.2015.2320 http://doi.org/10.1098/rspb.2015.2320 .
H X Wang , X L Chai , B Z Liu . Estimation of genetic parameters for growth traits in cultured clam Meretrix meretrix (Bivalvia:Veneridae) using the Bayesian method based on Gibbs sampling . Aquaculture Research , 2011 . 42 ( 2 ): 240 - 247 . DOI: 10.1111/j.1365-2109.2010.02617.x http://doi.org/10.1111/j.1365-2109.2010.02617.x .
A Whitehead , D L Crawford . Variation within and among species in gene expression:raw material for evolution . Molecular Ecology , 2006 . 15 ( 5 ): 1 197 - 1 211 . DOI: 10.1111/j.1365-294X.2006.02868.x http://doi.org/10.1111/j.1365-294X.2006.02868.x .
J M Yáñez , R Bangera , J P Lhorente , A Barría , M Oyarzún , R Neira , S Newman . Negative genetic correlation between resistance against Piscirickettsia salmonis and harvest weight in coho salmon ( Oncorhynchus kisutch ) . Aquaculture , 2016 . 459 8 - 13 . DOI: 10.1016/j.aquaculture.2016.03.020 http://doi.org/10.1016/j.aquaculture.2016.03.020 .
J Yang , B Benyamin , B P McEvoy , S Gordon , A K Henders , D R Nyholt , P A Madden , A C Heath , N G Martin , G W Montgomery , M E Goddard , P M Visscher . Common SNPs explain a large proportion of the heritability for human height . Nature Genetics , 2010 . 42 ( 7 ): 565 - 569 . DOI: 10.1038/ng.608 http://doi.org/10.1038/ng.608 .
L H Zou , B Z Liu . The polymorphisms of a MIF gene and their association with Vibrio resistance in the clam Meretrix meretrix . Developmental & Comparative Immunology , 2016 . 62 116 - 126 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=81081d5227a688b879765306b6a195dd http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=81081d5227a688b879765306b6a195dd , .
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