Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole <italic style="font-style: italic">Cynoglossus semilaevis</italic>

Xiaoli JIANG; Xiaohong JING; Yan LÜ; Changmin SHAN; Jiahua LI; Yan YU; Yuyong WU; Yeying SUN

doi:10.1007/s00343-019-8287-6

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Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis

Biology | Updated：2023-04-27

- Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis
- Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis
- 海洋湖沼学报（英文） 2020年38卷第1期页码：226-235
- Affiliations：
  
  1.College of Pharmacy, Binzhou Medical University, Yantai 264003, China
  2.College of Life Science, Yantai University, Yantai 264005, China
- Author bio：
  
  SUN Yeying, sunyy21cn@163.com
- Funds：
  
  the Shandong Provincial Natural Science Foundation(ZR2013CL003);the National Natural Science Foundation of China(81670398);the National Natural Science Foundation of China(91639102);the funding of Taishan Scholars of Shandong Province to Binzhou Medical University and the Key Research Project of Yantai City(2018ZHGY071);© Chinese Society for Oceanology and Limnology, Science Press and Springer-Verlag GmbH Germany, part of Springer Nature 2020
- DOI：10.1007/s00343-019-8287-6
  中图分类号：
- 收稿：2018-10-17，
  
  录用：2019-1-29，
  
  网络首发：2019-03-21，
  
  纸质出版：2020-01
- Accepted：
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Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis[J]. 海洋湖沼学报（英文）, 2020,38(1):226-235.

Xiaoli JIANG, Xiaohong JING, Yan LÜ, et al. Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis[J]. Journal of Oceanology and Limnology, 2020, 38(1): 226-235.
Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis[J]. 海洋湖沼学报（英文）, 2020,38(1):226-235. DOI： 10.1007/s00343-019-8287-6.

Xiaoli JIANG, Xiaohong JING, Yan LÜ, et al. Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis[J]. Journal of Oceanology and Limnology, 2020, 38(1): 226-235. DOI： 10.1007/s00343-019-8287-6.

摘要

Abstract

At present

the function and profile of long noncoding RNAs (lncRNAs) in half-smooth tongue soles

Cynoglossus semilaevis

remain poorly understood. Therefore

we identified lncRNAs in the species using large-scale deep sequencing approaches. A total of 96 726 222 clean reads and 2497 lncRNAs were obtained from the compound samples. In total

1 694 known lncRNAs and 803 novel lncRNAs were identified. Most of the novel lncRNAs distributed mainly in a range of 200-3 000 nt and contained 2-6 exons. Six novel lncRNAs were selected for expression analysis by quantitative reverse transcription-polymerase chain reaction

of which lnc_770 and lnc_150 were expressed mainly in the ovary. This study provides a valuable resource for lncRNA studies of half-smooth tongue sole and improves our understanding of the function of non-coding RNA in fish.

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Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis

DOI：10.1007/s00343-019-8287-6

摘要

Abstract

关键词

Keywords

references