Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker <italic style="font-style: italic">Larimichthys crocea</italic> in Sansha Bay, China

Shizhan ZHENG; Shouheng ZHOU; Wen YANG; Betina LUKWAMBE; Regan NICHOLAUS; Jinyong ZHU; Zhongming ZHENG

Your Location：

Home >

Browse articles >

Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China

Ecology | Updated：2024-10-14

- Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China
- Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China
- 海洋湖沼学报(英文) 2023年41卷第4期页码：1481-1492
- Affiliations：
  
  1.School of Marine Sciences, Ningbo University, Ningbo 315211, China
  2.Key Laboratory of Marine Bioengineering of Zhejiang Province, Ningbo University, Ningbo 315211, China
  3.School of Aquatic Sciences and Fisheries Technology, University of Dares Salaam, Dares Salaam 999132, Tanzania
  4.Department of Natural Sciences, Mbeya University of Science and Technology, Mbeya 53119, Tanzania
- Author bio：
  
  zhengzhongming@nbu.edu.cn
- Funds：
  
  the National Key Research and Development Program of China(2018YFC1406300);the Natural Science Foundation of Zhejiang Province(LQ20C190003);the Department of Education Scientific Research Project of Zhejiang Province(Y201839309);the Natural Science Foundation of Ningbo(2019A610421;2019A610443);the K. C. Wong Magna Fund in Ningbo University
- DOI：
  中图分类号：
- 收稿：2021-12-18，
  
  录用：2022-02-17，
  
  纸质出版：2023-07-01
- Accepted：
Scan QR Code
Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China[J]. 海洋湖沼学报(英文), 2023,41(4):1481-1492.

ZHENG Shizhan,ZHOU Shouheng,YANG Wen,et al.Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China[J].Journal of Oceanology and Limnology,2023,41(04):1481-1492.
Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China[J]. 海洋湖沼学报(英文), 2023,41(4):1481-1492. DOI：

ZHENG Shizhan,ZHOU Shouheng,YANG Wen,et al.Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China[J].Journal of Oceanology and Limnology,2023,41(04):1481-1492. DOI：

摘要

Abstract

As an important spawning ground for large yellow croaker

Larimichthys

crocea

Sansha Bay

South China Sea has been a research hotspot. However

studies on the influence of the bacterioplankton community and assessments of its seasonal succession of bacterioplankton in different sea areas in Sansha Bay are still limited. To address the issue

we use 16S rRNA gene amplicon sequencing and functional prediction to investigate the spatial-temporal dynamics of the bacterioplankton community in three distinct areas

i.‍e.

Breeding Area (BA)

Yantian Harbor (YH)

and Bay Margin (BM) of Sansha Bay. Results show that the structure of the bacterioplankton community in Sansha Bay had a significant seasonal succession. Moreover

the representative zero-radius Operation Taxon Units in different seasons were significantly different among the three selected sea areas. Specifically

during the breeding seaso

bacterioplankton communities in BA were characterized by compound-degrading bacteria

such as

Rhodococcus

and

Owenweeksia

while in YH and BM

animal parasites or symbionts such as

Vibrio

and

Arcobacter

were dominant. Furthermore

the redundancy analysis and Spearman correlation analysis further explained that water temperature

dissolved oxygen

and ammonia nitrogen were the main environmental factors responsible for the difference. In addition

the bioindicator functions screened by Functional Annotation of Prokaryotic Taxa and random forest machine learning mainly relied on compound degradation

nitrite oxidation

and photoheterotrophy. The compound-degradation-corresponded bacterioplankton genera such as

Rhodococcus

had relatively higher abundance in BM

while

Nitrospina

corresponding to nitrite oxidation tended to be abundant in YH and BA. Based on the spatial and temporal variation in the composition and function of bacterioplankton

our findings provide a basis for understanding the theory of bacterioplankton community structure in the inner-bay habitat of the large yellow croaker in Sansha Bay.

关键词

Keywords

references

Brown M V , Ostrowski M , Grzymski J J et al . 2014 . A trait based perspective on the biogeography of common and abundant marine bacterioplankton clades . Marine Genomics , 15 : 17 - 28 , https://doi.‍org/10.1016/j.‍margen.2014.03.002 https://doi.‍org/10.1016/j.‍margen.2014.03.002 . https://do 10.1016/j.margen.2014.03.002 http://dx.doi.org/10.1016/j.margen.2014.03.002

Canion A , Prakash O , Green S J et al . 2013 . Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway) . Environmental Microbiology , 15 ( 5 ): 1606 - 1618 , https://doi.org/10.1111/1462-2920.12110 https://doi.org/10.1111/1462-2920.12110 .

Caporaso J G , Lauber C L , Walters W A et al . 2011 . Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample . Proceedings of the National Academy of Sciences of the United States of America , 108 ( S1 ): 4516 - 4522 , https://doi.‍org/10.1073/pnas.1000080107 https://doi.‍org/10.1073/pnas.1000080107 . https://do 10.1073/pnas.1000080107 http://dx.doi.org/10.1073/pnas.1000080107

Chen Y J , Xu D P , Shi W G . 2015 . Effects of environmental factors on behavior preference of aquatic animal . Chinese Agricultural Science Bulletin , 31 ( 20 ): 18 - 24 , https://doi.org/10.11924/j.issn.1000-6850.casb15010028. https://doi.org/10.11924/j.issn.1000-6850.casb15010028. (in Chinese with English abstract)

Duarte L N , Coelho F J R C , Cleary D F R et al . 2019 . Bacterial and microeukaryotic plankton communities in a semi-intensive aquaculture system of sea bass ( Dicentrarchus labrax ): a seasonal survey . Aquaculture , 503 : 59 - 69 , https://doi.‍org/10.1016/j.‍aquaculture.‍2018.12.066 https://doi.‍org/10.1016/j.‍aquaculture.‍2018.12.066 . https://do 10.1016/j.aquaculture.2018.12.066 http://dx.doi.org/10.1016/j.aquaculture.2018.12.066

Edgar R C . 2016 . UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing . BioRxiv , https://doi.org/10.1101/081257 https://doi.org/10.1101/081257 .

Enns A A , Vogel L J , Abdelzaher A M et al . 2012 . Spatial and temporal variation in indicator microbe sampling is influential in beach management decisions . Water Research , 46 ( 7 ): 2237 - 2246 , https://doi.‍org/10.1016/j.watres.2012.01.040 https://doi.‍org/10.1016/j.watres.2012.01.040 . https://do 10.1016/j.watres.2012.01.040 http://dx.doi.org/10.1016/j.watres.2012.01.040

Fryer J L , Lannan C N , Garces L H et al . 1990 . Isolation of a rickettsiales-like organism from diseased coho salmon ( Oncorhynchus kisutch ) in Chile . Fish Pathology , 25 ( 2 ): 107 - 114 , https://doi.org/10.3147/jsfp.25.107 https://doi.org/10.3147/jsfp.25.107 .

Fuhrman J . 1992 . Bacterioplankton roles in cycling of organic matter: the microbial food web . In: Falkowski P G, Woodhead A D, Vivirito K eds. Primary Productivity and Biogeochemical Cycles in the Sea . Springer, New York . p. 361 - 383 , https://doi.‍org/10.‍1007/978-1-4899-0762-2_20 https://doi.‍org/10.‍1007/978-1-4899-0762-2_20 . https://do 10.1007/978-1-4899-0762-2_20 http://dx.doi.org/10.1007/978-1-4899-0762-2_20

Fuhrman J A , Steele J A . 2008 . Community structure of marine bacterioplankton: patterns, networks, and relationships to function . Aquatic Microbial Ecology , 53 ( 1 ): 69 - 81 , https://doi.org/10.3354/ame01222 https://doi.org/10.3354/ame01222 .

General Administration of Quality Supervision , Inspection and Quarantine of the People's Republic of China , Standardization Administration . 2008 . GB 17378.4-2007 The specification for marine monitoring—Part 4: seawater analysis . Beijing : Standards Press of China . (in Chinese)

Gómez-Pereira P R , Fuchs B M , Alonso C et al . 2010 . Distinct Flavobacterial communities in contrasting water masses of the North Atlantic Ocean . ISME Journal , 4 ( 4 ): 472 - 487 , https://doi.org/10.1038/ismej.2009.142 https://doi.org/10.1038/ismej.2009.142 .

Ho H T K , Lipman L J A , Gaastra W . 2006 . Arcobacter , what is known and unknown about a potential foodborne zoonotic agent! Veterinary Microbiology , 115 ( 1-3 ): 1 - 13 , https://doi.org/10.1016/j.vetmic.2006.03.004 https://doi.org/10.1016/j.vetmic.2006.03.004 .

Hu C J , Xiong J B , Chen H P et al . 2015 . Distribution of bacterioplankton communities in cage culture and non-cultured areas of Xiangshan Bay, Ningbo, China . Acta Ecologica Sinica , 35 ( 24 ): 8053 - 8061 , https://doi.‍org/10.5846/stxb201406171263. https://doi.‍org/10.5846/stxb201406171263. (in Chinese with English abstract) . https://do 10.5846/stxb201406171263 http://dx.doi.org/10.5846/stxb201406171263

Huang M R . 2018 . Study on Species Diversity of Marine Bacterial Community in Xiamen Coast and Predict Their Function . Xiamen University, Xiamen . (in Chinese with English abstract)

Jing X Y , Gou H L , Gong Y H et al . 2019 . Seasonal dynamics of the coastal bacterioplankton at intensive fish-farming areas of the Yellow Sea, China revealed by high-throughput sequencing . Marine Pollution Bulletin , 139 : 366 - 375 , https://doi.org/10.1016/j.marpolbul.2018.12.052 https://doi.org/10.1016/j.marpolbul.2018.12.052 .

Kan J J , Crump B C , Wang K et al . 2006 . Bacterioplankton community in Chesapeake Bay: predictable or random assemblages . Limnology and Oceanography , 51 ( 5 ): 2157 - 2169 , https://doi.org/10.4319/lo.2006.51.5.2157 https://doi.org/10.4319/lo.2006.51.5.2157 .

Kataoka T , Hodoki Y , Suzuki K et al . 2009 . Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean . Journal of Marine Systems , 77 ( 1-2 ): 197 - 207 , https://doi.org/10.‍1016/j.jmarsys.2008.12.006 https://doi.org/10.‍1016/j.jmarsys.2008.12.006 .

Levipan H A , Molina V , Fernandez C . 2014 . Nitrospina-like bacteria are the main drivers of nitrite oxidation in the seasonal upwelling area of the eastern south pacific (central Chile ~36°‍S) . Environmental Microbiology Reports , 6 ( 6 ): 565 - 573 , https://doi.‍org/10.1111/1758-2229.12158 https://doi.‍org/10.1111/1758-2229.12158 . https://do 10.1111/1758-2229.12158 http://dx.doi.org/10.1111/1758-2229.12158

Li X F , Xu J , Shi Z et al . 2019 . Regulation of protist grazing on bacterioplankton by hydrological conditions in coastal waters . Estuarine, Coastal and Shelf Science , 218 : 1 - 8 , https://doi.org/10.1016/j.ecss.2018.11.013 https://doi.org/10.1016/j.ecss.2018.11.013 .

Lin H Y , Chen Z Z , Hu J Y et al . 2019 . Impact of cage aquaculture on water exchange in Sansha Bay . Continental Shelf Research , 188 : 103963 , https://doi.org/10.1016/j.csr.2019.103963 https://doi.org/10.1016/j.csr.2019.103963 .

Liu J F . 2004 . Study on twice maturity characteristic of cultured large yellow croaker in one year . Journal of Fujian Fisheries , ( 1 ): 4 - 8 , https://doi.‍org/10.3969/j.‍issn.1006-5601.2005.01.003. https://doi.‍org/10.3969/j.‍issn.1006-5601.2005.01.003. (in Chinese with English abstract)

Louca S , Parfrey L W , Doebeli M . 2016 . Decoupling function and taxonomy in the global ocean microbiome . Science , 353 ( 6305 ): 1272 - 1277 , https://doi.‍org/10.1126/science.aaf4507 https://doi.‍org/10.1126/science.aaf4507 . https://do 10.1126/science.aaf4507 http://dx.doi.org/10.1126/science.aaf4507

Lücker S , Nowka B , Rattei T et al . 2013 . The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer . Frontiers in Microbiology , 4 : 27 , https://doi.‍org/10.3389/fmicb.‍2013.00027 https://doi.‍org/10.3389/fmicb.‍2013.00027 . https://do 10.3389/fmicb.2013.00027 http://dx.doi.org/10.3389/fmicb.2013.00027

Murray A E , Peng V , Tyler C et al . 2011 . Marine bacterioplankton biomass, activity and community structure in the vicinity of Antarctic icebergs . Deep-Sea Research Part II : Topical Studies in Oceanography , 58 ( 11-12 ): 1407 - 1421 , https://doi.‍org/10.‍1016/j.‍dsr2.2010.11.021 https://doi.‍org/10.‍1016/j.‍dsr2.2010.11.021 . https://do 10.1016/j.dsr2.2010.11.021 http://dx.doi.org/10.1016/j.dsr2.2010.11.021

Partensky F , Blanchot J , Vaulot D . 1999 . Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review . Bulletin de l'Institut Océanographique , 19 : 457 - 476 . https://do 10.1525/bio.2011.61.10.3 http://dx.doi.org/10.1525/bio.2011.61.10.3

Porsby C H , Nielsen K F , Gram L . 2008 . Phaeobacter and Ruegeria species of the Roseobacter clade colonize separate niches in a Danish turbot ( Scophthalmus maximus )-rearing farm and antagonize Vibrio anguillarum under different growth conditions . Applied and Environmental Microbiology , 74 ( 23 ): 7356 - 7364 , https://doi.org/10.1128/AEM.01738-08 https://doi.org/10.1128/AEM.01738-08 .

Prabagaran S R , Manorama R , Delille D et al . 2007 . Predominance of Roseobacter , Sulfitobacter , Glaciecola and Psychrobacter in seawater collected off Ushuaia, Argentina, Sub-Antarctica . FEMS Microbiology Ecology , 59 ( 2 ): 342 - 355 , https://doi.‍org/10.1111/j.‍1574-6941.2006.00213.x https://doi.‍org/10.1111/j.‍1574-6941.2006.00213.x . https://do 10.1111/j.1574-6941.2006.00213.x http://dx.doi.org/10.1111/j.1574-6941.2006.00213.x

Prado S , Montes J , Romalde J L et al . 2009 . Inhibitory activity of Phaeobacter strains against aquaculture pathogenic bacteria . International Microbiology , 12 ( 2 ): 107 - 114 .

Qu C F , Song J M , Li N . 2014 . Causes of jellyfish blooms and their influence on marine environment . Chinese Journal of Applied Ecology , 25 ( 12 ): 3701 - 3712 , https://doi.‍org/10.13287/j.‍1001-9332.20141009.005. https://doi.‍org/10.13287/j.‍1001-9332.20141009.005. (in Chinese with English abstract)

Shen C C . 2011 . Fish community composition and diversity in Sansha Bay of Fujian . Marine Fisheries , 33 ( 3 ): 258 - 264 , https://doi.‍org/10.‍13233/j.‍cnki.‍mar.‍fish.‍2011.03.011. https://doi.‍org/10.‍13233/j.‍cnki.‍mar.‍fish.‍2011.03.011. (in Chinese with English abstract)

Soelberg K K , Danielsen T K L , Martin-Iguacel R et al . 2020 . Arcobacter butzleri is an opportunistic pathogen: recurrent bacteraemia in an immunocompromised patient without diarrhoea . Access Microbiology , 2 ( 8 ): acmi 000145 , https://doi.org/10.1099/acmi.0.000145 https://doi.org/10.1099/acmi.0.000145 .

Sunagawa S , Coelho L P , Chaffron S et al . 2015 . Structure and function of the global ocean microbiome . Science , 348 ( 6237 ): 1261359 , https://doi.‍org/10.1126/science.1261359 https://doi.‍org/10.1126/science.1261359 .

Tapia-Paniagua S T , Vidal S , Lobo C et al . 2014 . The treatment with the probiotic Shewanella putrefaciens Pdp11 of specimens of Solea senegalensis exposed to high stocking densities to enhance their resistance to disease . Fish & Shellfish Immunology , 41 ( 2 ): 209 - 221 , https://doi.org/10.1016/j.fsi.2014.08.019 https://doi.org/10.1016/j.fsi.2014.08.019 .

Xie B , Huang J J , Huang C et al . 2020 . Stable isotopic signatures (δ 13 C and δ 15 N) of suspended particulate organic matter as indicators for fish cage culture pollution in Sansha Bay, China . Aquaculture , 522 : 735081 , https://doi.org/10.1016/j.aquaculture.2020.735081 https://doi.org/10.1016/j.aquaculture.2020.735081 .

Xie H Y . 2018 . Risk Assessment of Harmful Algal Blooms: Taking Ningde Coast as an Example . Shanghai Ocean University , Shanghai . (in Chinese with English abstract) . https://do 10.1002/9781118994672.ch1 http://dx.doi.org/10.1002/9781118994672.ch1

Xiong J B , Chen H P , Hu C J et al . 2015 . Evidence of bacterioplankton community adaptation in response to long-term mariculture disturbance . Scientific Reports , 5 : 15274 , https://doi.org/10.1038/srep15274 https://doi.org/10.1038/srep15274 .

Xu J Y , Xu Z L . 2013 . Seasonal succession of zooplankton in Sansha Bay, Fujian . Acta Ecologica Sinica , 33 ( 5 ): 1413 - 1424 , https://doi.‍org/10.5846/stxb201207241050. https://doi.‍org/10.5846/stxb201207241050. (in Chinese with English abstract) . https://do 10.5846/stxb201207241050 http://dx.doi.org/10.5846/stxb201207241050

Xu Z L , Chen J J . 2011 . Analysis of migratory route of Larimichthys crocea in the East China Sea and Yellow Sea . Journal of Fisheries of China , 35 ( 3 ): 429 - 437 . (in Chinese with English abstract)

Yan Z C , Chen Y L . 1998 . Habitat selection in animals . Chinese Journal of Ecology , 17 ( 2 ): 43 - 49 . (in Chinese)

Yang W , Zheng S Z , Zhou S H et al . 2020 . Structure and functional diversity of Surface bacterioplankton communities in an overwintering habitat for large yellow croaker, Pseudosciaena crocea , of the southern East China Sea . Frontiers in Marine Science , 7 : 472 , https://doi.org/10.3389/fmars.2020.00472 https://doi.org/10.3389/fmars.2020.00472 .

Zhang D M , Wang X , Xiong J B et al . 2014 . Bacterioplankton assemblages as biological indicators of shrimp health status . Ecological Indicators , 38 : 218 - 224 , https://doi.org/10.1016/j.ecolind.2013.11.002 https://doi.org/10.1016/j.ecolind.2013.11.002 .

Zhang L B , Yang H S . 2012 . Advances in principles and techniques of marine habitat restoration and biological resource conservation . Chinese Bulletin of Life Sciences , 24 ( 9 ): 1062 - 1069 . (in Chinese with English abstract)

Zheng Y , Yang J M . 1965 . Feeding habits of larva, and juvenile large yellow croaker in Zhejiang coastal waters . Oceanologia et Limnologia Sinica , 7 ( 4 ): 355 - 372 . (in Chinese with English abstract)

Zhou L , Wang P F , Huang S H et al . 2021 . Environmental filtering dominates bacterioplankton community assembly in a highly urbanized estuarine ecosystem . Environmental Research , 96 : 110934 , https://doi.‍org/10.1016/j.envres.2021.110934 https://doi.‍org/10.1016/j.envres.2021.110934 . https://do 10.1016/j.envres.2021.110934 http://dx.doi.org/10.1016/j.envres.2021.110934

浏览量

Downloads

CSCD

文章被引用时，请邮件提醒。

Submit

工具集

关联资源

Polystyrene microplastics affect the early life stages of large yellow croaker Pseudosciaena crocea

Community composition, co-occurrence, and environmental drivers of bacterioplankton community in surface and 50-m water layers in the subarctic North Pacific

Environmental hypoxia induces apoptosis in large yellow croaker Larimichthyscrocea via both intrinsic and extrinsic pathways

Comparative study on the organoleptic quality of wild and farmed large yellow croaker Larimichthys crocea

高压涡轮封严流与主流相互作用的机理研究

Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China

Spatial-temporal dynamics of bacterioplankton communities in the breeding area of large yellow croaker Larimichthys crocea in Sansha Bay, China

DOI：

摘要

Abstract

关键词

Keywords

references