The complete mitochondrial genome of <italic style="font-style: italic">Parachiloglanis hodgarti</italic> and its phylogenetic position within Sisoridae

Jiasheng LI; Ying PENG; Shufei ZHANG; Yifan LIU; Kun ZHANG; Jian CHEN; Hua ZHANG; Chi ZHANG; Bingjian LIU

doi:10.1007/s00343-021-1319-z

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The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae

Biology | Updated：2023-04-27

- The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae
- Journal of Oceanology and Limnology Vol. 41, Issue 1, Pages: 267-279(2023)
- Affiliations：
  
  1.National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan 316022, China
  2.Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa 850000, China
  3.Guangdong Provincial Key Laboratory of Fishery Ecology and Environment; South China Sea Fisheries Research Institute, Chinese Academy of Fisheries Sciences, Guangzhou 510300, China
  4.Key Laboratory of Tropical Marine Bio-resources and Ecology, Chinese Academy of Sciences, Guangzhou 510301, China
- Author bio：
  
  Chi ZHANG, E-mail: zc0891@163.com
  Bingjian LIU, E-mail: bjetbj@163.com
- Funds：
- DOI：10.1007/s00343-021-1319-z
  CLC：
- Received：12 October 2021，
  
  Accepted：22 November 2021，
  
  Online First：29 December 2021，
  
  Published：2023-01
- Accepted：
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Jiasheng LI, Ying PENG, Shufei ZHANG, et al. The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. Journal of Oceanology and Limnology, 2023, 41(1): 267-279.
DOI：

Jiasheng LI, Ying PENG, Shufei ZHANG, et al. The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. Journal of Oceanology and Limnology, 2023, 41(1): 267-279. DOI： 10.1007/s00343-021-1319-z.

摘要

Abstract

The complete mitogenome of

Parachiloglanis hodgarti

was sequenced and characterized

which is the first mitogenome of the genus

Parachiloglanis

within Sisoridae. The mitogenome is 16 511-bp long and included 13 protein-coding genes

22 transfer RNAs

two ribosomal RNAs

and one control region. The genome composition was A+T biased (58.64%) and exhibited a positive AT-skew (0.095) and a negative GC-skew (-0.283). Compared with other Sisoridae fishes

the characteristics of nucleotide skews

codon usage

and amino acid usage of the

P. hodgarti

mitogenome are more similar to those of non-Glyptosternoid fishes. Furthermore

the phylogenetic trees show that Sisoridae fishes fall into four major clades and

hodgarti

(Clade Ⅰ) is basal to the Sisoridae family

forming a sister clade to the Glyptosternoids (Clade Ⅳ). The topological structures constructed in this study raised doubts over the traditional classification system. These results will help better understand the features of the

P. hodgarti

mitogenome and provide a reference for further phylogenetic research on Sisoridae species.

关键词

Keywords

references

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⁰

The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae

DOI：10.1007/s00343-021-1319-z

摘要

Abstract

关键词

Keywords

references