Contrasting vertical distribution between prokaryotes and fungi in different water masses on the Ninety-East Ridge, Southern Indian Ocean

Shujun Li; Zhisong Cui; Mutai Bao; Xiao Luan; Fei Teng; Shujiang Li; Tengfei Xu; Li Zheng

doi:10.1007/s00343-021-1046-5

Your Location：

Home >

Browse articles >

Contrasting vertical distribution between prokaryotes and fungi in different water masses on the Ninety-East Ridge, Southern Indian Ocean

Article | Updated：2023-05-20

- Contrasting vertical distribution between prokaryotes and fungi in different water masses on the Ninety-East Ridge, Southern Indian Ocean
- Journal of Oceanology and Limnology Vol. 40, Issue 2, Pages: 605-619(2022)
- Affiliations：
  
  1.Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, and College of Chemistry and Chemical Engineering, Ocean University of China, Qingdao 266100, China
  2.Marine Bioresources and Environment Research Center, First Institute of Oceanography, Ministry of Natural Resources of China, Qingdao 266061, China
  3.Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China
  4.State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- Author bio：
  
  Zhisong CUI, E-mail: czs@fio.org.cn
  Mutai BAO, E-mail: mtbao@ouc.edu.cn
- Funds：
- DOI：10.1007/s00343-021-1046-5
  CLC：
- Received：19 October 2020，
  
  Accepted：24 February 2021，
  
  Online First：01 April 2021，
  
  Published：2022-03
- Accepted：
Scan QR Code
Shujun Li, Zhisong Cui, Mutai Bao, et al. Contrasting vertical distribution between prokaryotes and fungi in different water masses on the Ninety-East Ridge, Southern Indian Ocean[J]. Journal of Oceanology and Limnology, 2022, 40(2): 605-619.
DOI：

Shujun Li, Zhisong Cui, Mutai Bao, et al. Contrasting vertical distribution between prokaryotes and fungi in different water masses on the Ninety-East Ridge, Southern Indian Ocean[J]. Journal of Oceanology and Limnology, 2022, 40(2): 605-619. DOI： 10.1007/s00343-021-1046-5.

摘要

Abstract

Although the microbial diversity of the Indian Ocean has been extensively investigated

little is known about the community composition of microbes in the Southern Indian Ocean. In the present study

we divided 60 water column samples on the Ninety-East Ridge (NER) into five water masses according to the temperature-salinity curves. We presented

for the first time

a full description of the microbial biodiversity on NER through high-throughput amplicon sequencing approach

including bacteria

archaea

and fungi. We found that bacteria exhibited higher richness and diversity than archaea and fungi across the water masses on NER. More importantly

each water mass on NER featured distinct prokaryotic microbial communities

as indicated by the results of non-metric multidimensional scaling. In contrast

fungi were eurybathic across the water masses. Redundancy analysis results demonstrated that environmental factors might play a pivotal role in the formation and stability of prokaryotic communities in each water mass

especially that of archaea. In addition

indicator species might be used as fingerprints to identify corresponding water masses on NER. These results provide new insights into the vertical distribution

structure

and diversity of microorganisms on NER from the perspective of water mass.

关键词

Keywords

references

Arrigo K R. 2005. Marine microorganisms and global nutrient cycles. Nature , 437 (7057): 349–355, https://doi.org/10.1038/nature04159..

Bokulich N A, Kaehler B D, Rideout J R, Dillon M, Bolyen E, Knight R, Huttley G A, Caporaso J G. 2018. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin. Microbiome , 6 : 90. https://doi.org/10.1186/s40168-018-0470-z..

Bolyen E, Rideout J R, Dillon M R, Bokulich N A, Abnet C C, Al-Ghalith G A, Alexander H, Alm E J, Arumugam M, Asnicar F, Bai Y, Bisanz J E, Bittinger K, Brejnrod A, Brislawn C J, Brown C T, Callahan B J, Caraballo-Rodríguez A M, Chase J, Cope E K, Da Silva R, Diener C, Dorrestein P C, Douglas G M, Durall D M, Duvallet C, Edwardson C F, Ernst M, Estaki M, Fouquier J, Gauglitz J M, Gibbons S M, Gibson D L, Gonzalez A, Gorlick K, Guo J R, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley G A, Janssen S, Jarmusch A K, Jiang L J, Kaehler B D, Kang K B, Keefe C R, Keim P, Kelley S T, Knights D, Koester I, Kosciolek T, Kreps J, Langille M G I, Lee J, Ley R, Liu Y X, Loftfield E, Lozupone C, Maher M, Marotz C, Martin B D, McDonald D, McIver L J, Melnik A V, Metcalf J L, Morgan S C, Morton J T, Naimey A T, Navas-Molina J A, Nothias L F, Orchanian S B, Pearson T, Peoples S L, Petras D, Preuss M L, Pruesse E, Rasmussen L B, Rivers A, Robeson M S II, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song S J, Spear J R, Swafford A D, Thompson L R, Torres P J, Trinh P, Tripathi A, Turnbaugh P J, Ul-Hasan S, van der Hooft J J J, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y H, Wang M X, Warren J, Weber K C, Williamson C H D, Willis A D, Xu Z Z, Zaneveld J R, Zhang Y L, Zhu Q Y, Knight R, Caporaso J G. 2019. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology , 37 (8): 852–857, https://doi.org/10.1038/s41587-019-0209-9..

Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P. 2008. Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nature Reviews Microbiology , 6 (3): 245–252, https://doi.org/10.1038/nrmicro1852..

Callahan B J, McMurdie P J, Rosen M J, Han A W, Johnson A J A, Holmes S P. 2016. DADA2: high-resolution sample inference from Illumina amplicon data. Nature Methods , 13 (7): 581–583, https://doi.org/10.1038/nmeth.3869..

Carini P, Dupont C L, Santoro A E. 2018. Patterns of thaumarchaeal gene expression in culture and diverse marine environments. Environmental Microbiology , 20 (6): 2112–2124, https://doi.org/10.1111/1462-2920.14107..

Celussi M, Bergamasco A, Cataletto B, Umani S F, Del Negro P. 2010. Water masses' bacterial community structure and microbial activities in the Ross Sea, Antarctica. Antarctic Science , 22 (4): 361–370, https://doi.org/10.1017/S0954102010000192..

Chao A. 1984. Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics , 11 (4): 265–270..

Choi H, Koh H W, Kim H, Chae J C, Park S J. 2016. Microbial community composition in the marine sediments of Jeju Island: next-generation sequencing surveys. Journal of Microbiology and Biotechnology , 26 (5): 883–890, https://doi.org/10.4014/jmb.1512.12036..

Claesson M J, O'Sullivan O, Wang Q, Nikkilä J, Marchesi J R, Smidt H, de Vos W M, Ross R P, O'Toole P W. 2009. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One , 4 (8): e6669, https://doi.org/10.1371/journal.pone.0006669..

Fuhrman J A, Cram J A, Needham D M. 2015. Marine microbial community dynamics and their ecological interpretation. Nature Reviews Microbiology , 13 (3): 133–146, https://doi.org/10.1038/nrmicro3417..

Gao P, Qu L Y, Du G X, Wei Q S, Zhang X L, Yang G. 2021. Bacterial and archaeal communities in deep sea waters near the Ninetyeast Ridge in Indian Ocean. Journal of Oceanology and Limnology , 39 (2): 582–597, https://doi.org/10.1007/s00343-020-9343-y..

Good I J. 1953. The population frequencies of species and the estimation of population parameters. Biometrika , 40 (3–4): 237–264, https://doi.org/10.2307/2333344..

Guo X P, Lu D P, Niu Z S, Feng J N, Chen Y R, Tou F Y, Liu M, Yang Y. 2018. Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China. Marine Pollution Bulletin , 126 : 141–149, https://doi.org/10.1016/j.marpolbul.2017.11.003..

Hackbusch S, Noirungsee N, Viamonte J, Sun X X, Bubenheim P, Kostka J E, Müller R, Liese A. 2020. Influence of pressure and dispersant on oil biodegradation by a newly isolated Rhodococcus strain from deep-sea sediments of the Gulf of Mexico. Marine Pollution Bulletin , 150 : 110683, https://doi.org/10.1016/j.marpolbul.2019.110683..

Hanawa K, Talley L D. 2001. Mode waters. International Geophysics , 77 : 373–386, https://doi.org/10.1016/S0074-6142(01)80129-7..

Hatzenpichler R. 2012. Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea. Applied and Environmental Microbiology , 78 (21): 7501–7510, https://doi.org/10.1128/AEM.01960-12..

Herrero A, Muro-Pastor A M, Flores E. 2001. Nitrogen control in cyanobacteria. Journal of Bacteriology , 183 (2): 411–425, https://doi.org/10.1016/j.bmcl.2009.11.010..

Hoek J, Banta A, Hubler F, Reysenbach A L. 2003. Microbial diversity of a sulphide spire located in the Edmond deep-sea hydrothermal vent field on the Central Indian Ridge. Geobiology , 1 (2): 119–127, https://doi.org/10.1046/j.1472-4669.2003.00015.x..

Ingole B, Koslow J A. 2005. Deep-sea ecosystems of the Indian Ocean. Indian Journal of Marine Sciences , 34 (1): 27–34..

Junior N A, Meirelles P M, de Oliveira Santos E, Dutilh B, Silva G G Z, Paranhos R, Cabral A S, Rezende C, Iida T, de Moura R L, Kruger R H, Pereira R C, Valle R, Sawabe T, Thompson C, Thompson F. 2015. Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean. Archives of Microbiology , 197 (2): 165–179, https://doi.org/10.1007/s00203-014-1035-6..

Kazutaka K, Kazuharu M, Ichi K K et al. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research , 30 (14): 3059–3066, https://doi.org/10.1093/nar/gkf436..

Key R M, Olsen A, van Heuven S, Lauvset S K, Velo A, Lin X H, Schirnick C, Kozyr A, Tanhua T, Hoppema M, Jutterström S, Steinfeldt R, Jeansson E, Ishii M, Perez F F, Suzuki T. 2015. Global Ocean Data Analysis Project, Version 2 (GLODAPv2), ORNL/CDIAC-162, NDP-P093. Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US Department of Energy, Oak Ridge, Tennessee.

Khandeparker R, Meena R M, Deobagkar D. 2014. Bacterial diversity in deep-sea sediments from Afanasy Nikitin Seamount, equatorial Indian Ocean. Geomicrobiology Journal , 31 (10): 942–949, https://doi.org/10.1080/01490451.2014.918214..

Kõljalg U, Nilsson R H, Abarenkov K, Tedersoo L, Taylor A F S, Bahram M, Bates S T, Bruns T D, Bengtsson-Palme J, Callaghan T M, Douglas B, Drenkhan T, Eberhardt U, Dueñas M, Grebenc T, Griffith G W, Hartmann M, Kirk P M, Kohout P, Larsson E, Lindahl B D, Lücking R, Martín M P, Matheny P B, Nguyen N H, Niskanen T, Oja J, Peay K G, Peintner U, Peterson M, Põldmaa K, Saag L, Saar I, Schüßler A, Scott J A, Senés C, Smith M E, Suija A, Taylor D L, Telleria M T, Weiss M, Larsson K H. 2013. Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology , 22 (21): 5271–5277, https://doi.org/10.1111/mec.12481..

Korlević M, Ristova P P, Garić R, Amann R, Orlić S. 2015. Bacterial diversity in the South Adriatic Sea during a strong, deep winter convection year. Applied and Environmental Microbiology , 81 (5): 1715–1726, https://doi.org/10.1128/AEM.03410-14..

Krishna K S, Rao D G, Raju L V S, Chaubey A K, Shcherbakov V S, Pilipenko A I, Murthy I V R. 1999. Paleocene on-spreading-axis hotspot volcanism along the Ninetyeast Ridge: an interaction between the Kerguelen hotspot and the Wharton spreading center. Journal of Earth System Science , 108 (4): 255–267, https://doi.org/10.1007/BF02840503..

Kuchi N, Khandeparker L. 2020. Influence of salinity stress on bacterial diversity from a marine bioinvasion perspective: evaluation through microcosm experiments. Current Science , 119 (3): 507–525, https://doi.org/10.18520/cs/v119/i3/507-525..

Lauvset S K, Key R M, Olsen A, van Heuven S, Velo A, Lin X H, Schirnick C, Kozyr A, Tanhua T, Hoppema M, Jutterström S, Steinfeldt R, Jeansson E, Ishii M, Perez F F, Suzuki T, Watelet S. 2016. A new global interior ocean mapped climatology: the 1°×1° GLODAP version 2. Earth System Science Data , 8 (2): 325–340, https://doi.org/10.5194/essd-8-325-2016..

Legendre P, Legendre L. 1998. Numerical Ecology. 2 nd edn. Elsevier, Amsterdam.

Li W, Wang M M, Burgaud G, Yu H M, Cai L. 2019a. Fungal community composition and potential depth-related driving factors impacting distribution pattern and trophic modes from epi- to abyssopelagic zones of the western Pacific Ocean. Microbial Ecology , 78 (4): 820–831, https://doi.org/10.1007/s00248-019-01374-y..

Li Y T, Zhu X Y, Zhang W M, Zhu D C, Zhou X J, Zhang L K. 2019b. Archaeal communities in the deep-sea sediments of the South China Sea revealed by Illumina high-throughput sequencing. Annals of Microbiology , 69 (8): 839–848, https://doi.org/10.1007/s13213-019-01477-4..

Liu Q F, Li J T, Wei B B, Zhang X Y, Zhang L, Zhang Y Z, Fang J S. 2016. Leeuwenhoekiella nanhaiensis sp. nov., isolated from deep-sea water. International Journal of Systematic and Evolutionary Microbiology , 66 (3): 1352–1357, https://doi.org/10.1099/ijsem.0.000883..

Lovejoy C, Massana R, Pedrós-Alió C. 2006. Diversity and distribution of marine microbial eukaryotes in the Arctic Ocean and adjacent seas. Applied and Environmental Microbiology , 72 (5): 3085–3095, https://doi.org/10.1128/AEM.72.5.3085-3095.2006..

Maity J P, Chen C Y, Nath B, Bundschuh J, Bhattacharya P. 2012. Geothermal arsenic in Taiwan: geochemistry and microbial diversity. In : Ng J C, Noller B N, Naidu R, Bundschuh J, Bhattacharya P eds. Understanding the Geological and Medical Interface of Arsenic. Taylor & Francis Group, London. p. 483–485.

Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet Journal , 17 (1): 10–12, https://doi.org/10.14806/ej.17.1.200..

Medina-Silva R, De Oliveira R R, Pivel M A G, Borges L G A, Simão T L L, Pereira L M, Trindade F J, Augustin A H, Valdez F P, Eizirik E, Utz L R P, Groposo C, Miller D J, Viana A R, Ketzer J M M, Giongo A. 2018. Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean. Journal of Marine Systems , 178 : 52–61, https://doi.org/10.1016/j.jmarsys.2017.10.008..

Nagano Y, Nagahama T. 2012. Fungal diversity in deep-sea extreme environments. Fungal Ecology , 5 (4): 463–471, https://doi.org/10.1016/j.funeco.2012.01.004..

Olsen A, Key R M, van Heuven S, Lauvset S K, Velo A, Lin X H, Schirnick C, Kozyr A, Tanhua T, Hoppema M, Jutterström S, Steinfeldt R, Jeansson E, Ishii M, Pérez F F, Suzuki T. 2016. The global ocean data analysis project version 2 (GLODAPv2) — an internally consistent data product for the world ocean. Earth System Science Data , 8 (2): 297–323, https://doi.org/10.5194/essd-8-297-2016..

Orsi W D, Smith J M, Liu S T, Liu Z F, Sakamoto C M, Wilken S, Poirier C, Richards T A, Keeling P J, Worden A Z, Santoro A E. 2016. Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean. ISME Journal , 10 (9): 2158–2173, https://doi.org/10.1038/ismej.2016.20..

Park P K. 1969. A practical handbook of seawater analysis. Fisheries Research Board of Canada Bulletin 167. J. D. H. Strickland, T. R. Parsons. The Quarterly Review of Biology , 44 (3): 327..

Park S J, Kim J G, Jung M Y, Kim S J, Cha I T, Ghai R, Martín-Cuadrado A B, Rodríguez-Valera F, Rhee S K. 2012. Draft genome sequence of an ammonia-oxidizing archaeon, " Candidatus Nitrosopumilus sediminis " AR2, from Svalbard in the Arctic Circle. Journal of Bacteriology , 194 (24): 6948–6949, https://doi.org/10.1128/JB.01869-12..

Pereira O, Hochart C, Auguet J et al. 2019. Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean. MicrobiologyOpen , 8 (9): e00852, https://doi.org/10.1002/mbo3.852..

Pester M, Schleper C, Wagner M. 2011. The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Current Opinion in Microbiology , 14 (3): 300–306, https://doi.org/10.1016/j.mib.2011.04.007..

Picard A, Daniel I. 2013. Pressure as an environmental parameter for microbial life—a review. Biophysical Chemistry , 183 : 30–41, https://doi.org/10.1016/j.bpc.2013.06.019..

Pielou E C. 1966. The measurement of diversity in different types of biological collections. Journal of Theoretical Biology , 13 : 131–144, https://doi.org/10.1016/0022-5193(66)90013-0..

Pires A C C, Cleary D F R, Almeida A, Cunha Â, Dealtry S, Mendonça-Hagler L C S, Smalla K, Gomes N C M. 2012. Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples. Applied and Environmental Microbiology , 78 (16): 5520–5528, https://doi.org/10.1128/AEM.00386-12..

Pommier T, Canbäck B, Riemann L, Boström K H, Simu K, Lundberg P, Tunlid A, Hagström Å. 2007. Global patterns of diversity and community structure in marine bacterioplankton. Molecular Ecology , 16 (4): 867–880, https://doi.org/10.1111/j.1365-294X.2006.03189.x..

Price M N, Dehal P S, Arkin A P. 2009. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Molecular Biology and Evolution , 26 (7): 1641–1650, https://doi.org/10.1093/molbev/msp077..

Qian G, Wang J, Kan J J, Zhang X D, Xia Z Q, Zhang X C, Miao Y Y, Sun J. 2018. Diversity and distribution of anammox bacteria in water column and sediments of the eastern Indian Ocean. International Biodeterioration & Biodegradation , 133 : 52–62, https://doi.org/1016/j.ibiod.2018.05.015 https://doi.org/1016/j.ibiod.2018.05.015 ..

Qin H M, Gao D K, Zhu M L, Li C, Zhu Z L, Wang H B, Liu W D, Tanokura M, Lu F P. 2020. Biochemical characterization and structural analysis of ulvan lyase from marine Alteromonas sp. reveals the basis for its salt tolerance. International Journal of Biological Macromolecules , 147 : 1309–1317, https://doi.org/10.1016/j.ijbiomac.2019.10.095..

Ramirez-Llodra E, Brandt A, Danovaro R, De Mol B, Escobar E, German C R, Levin L A, Arbizu P M, Menot L, Buhl-Mortensen P, Narayanaswamy B E, Smith C R, Tittensor D P, Tyler P A, Vanreusel A, Vecchione M. 2010. Deep, diverse and definitely different: unique attributes of the world's largest ecosystem. Biogeosciences , 7 (9): 2851–2899, https://doi.org/10.5194/bg-7-2851-2010..

Reintjes G, Tegetmeyer H E, Bürgisser M, Orlić S, Tews I, Zubkov M, Voß D, Zielinski O, Quast C, Glöckner F O, Amann R, Ferdelman T G, Fuchs B M. 2019. On-site analysis of bacterial communities of the ultraoligotrophic south Pacific gyre. Applied and Environmental Microbiology , 85 (14): e00184–19, https://doi.org/10.1128/AEM.00184-19..

Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet G A, Lindahl B D, Menkis A, James T Y. 2011. Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science , 333 (6044): 876–879, https://doi.org/10.1126/science.1206958..

Rosling A, Timling I, Taylor L. 2013. Archaeorhizomycetes: patterns of distribution and abundance in soil. In : Horwitz B, Mukherjee P, Mukherjee M, Kubicek C eds. Genomics of Soil- and Plant-Associated Fungi. Springer, Berlin, Heidelberg. p. 333–349, https://doi.org/10.1007/978-3-642-39339-6_14 https://doi.org/10.1007/978-3-642-39339-6_14 . .

Sayed A M, Hassan M H A, Alhadrami H A, Hassan H M, Goodfellow M, Rateb M E. 2020. Extreme environments: microbiology leading to specialized metabolites. Journal of Applied Microbiology , 128 (3): 630–657, https://doi.org/10.1111/jam.14386..

Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett W S, Huttenhower C. 2011. Metagenomic biomarker discovery and explanation. Genome Biol. , 12 : R60, https://doi.org/10.1186/gb-2011-12-6-r60..

Shannon C E. 1948. A mathematical theory of communication. The Bell System Technical Journal , 27 (4): 623–656, https://doi.org/10.1002/j.1538-7305.1948.tb00917.x..

Simpson E H. 1949. Measurement of diversity. Nature , 163 (4148): 688, https://doi.org/10.1038/163688a0..

Singh P, Raghukumar C, Verma P, Shouche Y. 2011. Fungal community analysis in the deep-sea sediments of the central Indian basin by culture-independent approach. Microbial Ecology , 61 (3): 507–517, https://doi.org/10.1007/s00248-010-9765-8..

Sinha R K, Krishnana K P, Thomas F A, Binish M B, Mohan M, Kurian P J. 2019. Polyphasic approach revealed complex bacterial community structure and function in deep sea sediment of ultra-slow spreading Southwest Indian Ridge. Ecological Indicators , 96 : 50–51, https://doi.org/10.1016/j.ecolind.2018.08.063..

Sunagawa S, Coelho L P, Chaffron S, Kultima J R, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende D R, Alberti A, Cornejo-Castillo F M, Costea P I, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol J M, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos B T, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan M B, Weissenbach J, Wincker P, Karsenti E, Raes R, Acinas S G, Bork P. 2015. Structure and function of the global ocean microbiome. Science , 348 (6237): 1261359, https://doi.org/10.1126/science.1261359..

Sverdrup H U, Johnson M W, Fleming R H. 1942. The Oceans: Their Physics, Chemistry, and General Biology. Prentice-Hall, New York.

Uraibi H S, Midi H, Rana S. 2017. Selective overview of forward selection in terms of robust correlations. Communications in Statistics — Simulation and Computation , 46 (7): 5479–5503, https://doi.org/10.1080/03610918.2016.1164862..

Wang J, Kan J J, Borecki L, Zhang X D, Wang D X, Sun J. 2016. A snapshot on spatial and vertical distribution of bacterial communities in the eastern Indian Ocean. Acta Oceanologica Sinica , 35 (6): 85–93, https://doi.org/10.1007/s13131-016-0871-4..

Wang Y Y, Liao S L, Gai Y B, Liu G L, Jin T, Liu H, Gram L, Strube M L, Fan G Y, Sahu S K, Liu S S, Gan S H, Xie Z X, Kong L F, Zhang P F, Liu X, Wang D Z. 2021. Metagenomic analysis reveals microbial community structure and metabolic potential for nitrogen acquisition in the oligotrophic surface water of the Indian Ocean. Frontiers in Microbiology , 12 : 518865, https://doi.org/10.3389/fmicb.2021.518865..

Wang Z P, Liu Z Z, Wang Y L, Bi W H, Liu L, Wang H Y, Zheng Y, Zhang L L, Hu S G, Xu S S, Zhang P. 2019. Fungal community analysis in seawater of the Mariana Trench as estimated by Illumina HiSeq. RSC Advances , 9 (12): 6956–6964, https://doi.org/10.1039/c8ra10142f..

Wemheuer F, von Hoyningen-Huene A J E, Pohlner M, Degenhardt J, Engelen B, Daniel R, Wemheuer B. 2019. Primary production in the water column as major structuring element of the biogeographical distribution and function of archaea in deep-sea sediments of the central Pacific Ocean. Archaea , 2019 : 3717239, https://doi.org/10.1155/2019/3717239..

White T J, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In : PCR Protocols. Academic Press, London. p. 315–322, https://doi.org/10.1016/B978-0-12-372180-8.50042-1 https://doi.org/10.1016/B978-0-12-372180-8.50042-1 . .

Winter C, Matthews B, Suttle C A. 2013. Effects of environmental variation and spatial distance on bacteria, archaea and viruses in sub-polar and arctic waters. ISME Journal , 7 (8): 1507–1518, https://doi.org/10.1038/ismej.2013.56..

Xia X M, Guo W, Liu H B. 2017. Basin scale variation on the composition and diversity of archaea in the Pacific Ocean. Frontiers in Microbiology , 8 : 2057, https://doi.org/10.3389/fmicb.2017.02057..

Xu W, Pang K L, Luo Z H. 2014. High fungal diversity and abundance recovered in the deep-sea sediments of the Pacific Ocean. Microbial Ecology , 68 (4): 688–698, https://doi.org/10.1007/s00248-014-0448-8..

Yang C Y, Li Y, Zhou B, Zhou Y Y, Zheng W, Tian Y, Van Nostrand J D, Wu L Y, He Z L, Zhou J Z, Zheng T L. 2015. Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen Sea, China. Scientific Reports , 5 : 8476, https://doi.org/10.1038/srep08476..

Yao M R, Gao G P, Philips H E, Hu D H. 2017. Hydrographic features and water masses of southeast Indian Ocean region. Journal of PLA University of Science and Technology ( Natural Science Edition ), 18 (2): 170–176, https://doi.org/10.12018/jissn.1009-3443.20170115001. (in Chinese with English abstract).

Yoshida K, Takano K, Teramoto T, Toba Y, Nagata Y, Kajiura K, Nannichi T, Iwata N, Takahashi T, Chaen M, Tabata T. 1971. Physical oceanography. Journal of the Oceanographical Society of Japan , 27 (6): 248–264, https://doi.org/10.1007/BF02109744..

Zhao Q Q, Bai J H, Gao Y C, Zhao H X, Zhang G L, Cui B S. 2020. Shifts in the soil bacterial community along a salinity gradient in the Yellow River Delta. Land Degradation and Development , 31 (16): 2255–2267, https://doi.org/10.1002/ldr.3594..

Views

Downloads

CSCD

Alert me when the article has been cited

Submit

Tools

Publicity Resources

Analysis of the redox environment and genesis of surface sediment in the northeast Indian Ocean at the Ninety-East Ridge

Observation of physical oceanography at the Y3 seamount (Yap Arc) in winter 2014

Structure and formation of the South Yellow Sea water mass in the spring of 2007

The levels of microbial diversity in different water layers of saline Chagan Lake, China

Effect of carbon and nitrogen ratio control on Artemia growth, water quality, biofloc microbial diversity under high salinity and zero-water exchange culture condition

Related Author

Juan PENG

Meng TANG

Sibo LÜ

Xin SUI

Zhengxin YIN

Qianru HUANG

Zhourong CAI

Haijun HUANG

Related Institution

Key Laboratory of Marine Environmental Survey Technology and Application, Ministry of Natural Resources

South China Sea Marine Survey Center, Ministry of Natural Resources

Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering

School of Marine Sciences, Sun Yat-sen University

Center for Ocean Mega-Science, Chinese Academy of Sciences

Address：Editorial Office of JOL, 88 Haijun Rd. Qingdao, 266000, China
Tel：+86-532-82898754 Email：jol@qdio.ac.cn
Technical support is provided by Beijing Founder electronics co., LTD 京ICP备09064830号-19 京公网安备11010802024621
It is recommended to read the content of this site in Chrome&IE9+. Please switch to extreme mode in browser 360.
Cookies We use cookies to help provide and enhance our service and tailor content. By continuing, you agree to the use of cookies.

⁰