Eyes of differing colors in <italic style="font-style: italic">Alvinocaris longirostris</italic> from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism

Qian XIN; Min HUI; Chaolun LI; Zhongli SHA

doi:10.1007/s00343-020-9312-5

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Eyes of differing colors in Alvinocaris longirostris from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism

Biology | Updated：2023-05-20

- Eyes of differing colors in Alvinocaris longirostris from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism
- Journal of Oceanology and Limnology Vol. 39, Issue 1, Pages: 282-296(2021)
- Affiliations：
  
  1.Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
  2.Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China
  3.Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
  4.University of Chinese Academy of Sciences, Beijing 100049, China
- Author bio：
  
  Zhongli SHA, E-mail:shazl@qdio.ac.cn
- Funds：
- DOI：10.1007/s00343-020-9312-5
  CLC：
- Received：03 December 2019，
  
  Accepted：29 February 2020，
  
  Online First：08 March 2020，
  
  Published：2021-01
- Accepted：
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Qian XIN, Min HUI, Chaolun LI, et al. Eyes of differing colors in Alvinocaris longirostris from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism[J]. Journal of Oceanology and Limnology, 2021, 39(1): 282-296.
DOI：

Qian XIN, Min HUI, Chaolun LI, et al. Eyes of differing colors in Alvinocaris longirostris from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism[J]. Journal of Oceanology and Limnology, 2021, 39(1): 282-296. DOI： 10.1007/s00343-020-9312-5.

摘要

Abstract

Coloration is an important phenotypic trait for multiple adaptive functions. It is interesting to find white-eye (AW) and orange-eye (AO) phenotypes in the shrimp

Alvinocaris longirostris

inhabiting the deep-sea cold seep and hydrothermal vent areas of the northwestern Pacific. By comparative transcriptome analyses

1 491 differentially expressed genes (DEGs) were identified between AW and AO. Among them

many DEGs were associated with immunity

antioxidation

and detoxification. Two significant enzyme encoding genes

xanthine dehydrogenase

and tryptophan oxidase involved in pigment biosynthesis pathways were up-regulated in AW and AO

respectively

which might be related to the differences of white and orange eye phenotypes. Moreover

single nucleotide polymorphism (SNP) calling detected that genotypes of 28 SNP distributing in 14 unigenes were completely different between AW and AO. Particularly

there were three and two non-synonymous mutations in immune genes

crustin Pm5

and

antimicrobial peptide

respectively. Results indicate that the difference in eye color is probably resulted from immune response to variable micro-environmental stressors encountered in the dispersal process of the shrimps

such as symbiotic microbes

pathogens

and toxic substances

and might be genetically fixed at last. The suggested pathway preliminarily explained the formation mechanism of different eye phenotypes in Alvinocaridid shrimps

providing a basis for further study on adaptive evolution of eyes in deep-sea chemosynthetic faunas.

关键词

Keywords

references

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Eyes of differing colors in Alvinocaris longirostris from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism

DOI：10.1007/s00343-020-9312-5

摘要

Abstract

关键词

Keywords

references