Construction of high-density genetic linkage map of <italic style="font-style: italic">Pyropia</italic> <italic style="font-style: italic">yezoensis</italic> (Bangiales, Rhodophyta) and identification of red color trait QTLs in the thalli

Lu WANG; Kuipeng XU; Xianghai TANG; Junhao WANG; Fanna KONG; Yunxiang MAO

doi:10.1007/s00343-020-0184-5

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Construction of high-density genetic linkage map of Pyropia yezoensis (Bangiales, Rhodophyta) and identification of red color trait QTLs in the thalli

Aquaculture and Fisheries | Updated：2023-05-20

- Construction of high-density genetic linkage map of Pyropia yezoensis (Bangiales, Rhodophyta) and identification of red color trait QTLs in the thalli
- Journal of Oceanology and Limnology Vol. 39, Issue 3, Pages: 1103-1117(2021)
- Affiliations：
  
  1.Key Laboratory of Marine Genetics and Breeding(Ministry of Education), College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
  2.Key Laboratory of Utilization and Conservation of Tropical Marine Bioresource(Ministry of Education), College of Fisheries and Life Science, Hainan Tropical Ocean University, Sanya 572022, China
  3.Marine Biology and Biotechnology Laboratory, Pilot National Laboratory for Marine Science and Technology(Qingdao), Qingdao 266071, China
- Author bio：
  
  Fanna KONG, E-mail: fnkong@ouc.edu.cn
  Yunxiang MAO, E-mail: yxmao@hntou.edu.cn
- Funds：
- DOI：10.1007/s00343-020-0184-5
  CLC：
- Received：04 May 2020，
  
  Accepted：29 June 2020，
  
  Online First：06 July 2020，
  
  Published：2021-05
- Accepted：
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Lu WANG, Kuipeng XU, Xianghai TANG, et al. Construction of high-density genetic linkage map of Pyropia yezoensis (Bangiales, Rhodophyta) and identification of red color trait QTLs in the thalli[J]. Journal of Oceanology and Limnology, 2021, 39(3): 1103-1117.
DOI：

Lu WANG, Kuipeng XU, Xianghai TANG, et al. Construction of high-density genetic linkage map of Pyropia yezoensis (Bangiales, Rhodophyta) and identification of red color trait QTLs in the thalli[J]. Journal of Oceanology and Limnology, 2021, 39(3): 1103-1117. DOI： 10.1007/s00343-020-0184-5.

摘要

Abstract

Pyropia yezoensis

is an important macroalga because of its extensive global distribution and economic importance. Color is an important trait in the thalli of

yezoensis

it is also an effective marker to identify the hybridization in genetic breeding. In this study

a high-density genetic linkage map was constructed based on high-throughput single nucleotide polymorphism (SNP) markers

and used for analyzing the quantitative trait loci (QTLs) of red color trait in the thalli of

yezoensis

. The conchospore undergoes meiosis to develop into an ordered tetrad

and each cell has a haploid phenotype and can grow into a single individual. Based on this theory

F1 haploid population was used as the mapping population. The map included 531 SNP markers

394.57 cM long on average distance of 0.74 cM. Collinear analysis of the genetic linkage map and the physical map indicated that the coverage between the two maps was 79.42%. Furthermore

QTL mapping identified six QTLs for the chromosomal regions associated with the red color trait of the thalli. The value of phenotypic variance explained (PVE) by an individual QTL ranged from 4.71%-63.11%. And QTL

qRed

with a PVE of 63.11%

was considered the major QTL. Thus

these data may provide a platform for gene and QTL fine mapping

and marker-assisted breeding in

yezoensis

in the future.

关键词

Keywords

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Construction of high-density genetic linkage map of Pyropia yezoensis (Bangiales, Rhodophyta) and identification of red color trait QTLs in the thalli

DOI：10.1007/s00343-020-0184-5

摘要

Abstract

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