Characterization of microbial communities in sediments of the South Yellow Sea

Ye CHEN; Siqi LI; Xiaoqing XU; Manman MA; Tiezhu MI; Yu ZHEN; Zhigang YU

doi:10.1007/s00343-020-0106-6

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Characterization of microbial communities in sediments of the South Yellow Sea

Ecology | Updated：2023-05-20

- Characterization of microbial communities in sediments of the South Yellow Sea
- Journal of Oceanology and Limnology Vol. 39, Issue 3, Pages: 846-864(2021)
- Affiliations：
  
  1.College of Marine Life Science, Ocean University of China, Qingdao 266003, China
  2.Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology(Qingdao), Qingdao 266237, China
  3.Key Laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao 266100, China
  4.College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
  5.Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced Ocean Study, Ocean University of China, Qingdao 266100, China
- Author bio：
  
  Yu ZHEN, E-mail: zhenyu@ouc.edu.cn
- Funds：
- DOI：10.1007/s00343-020-0106-6
  CLC：
- Received：03 March 2020，
  
  Accepted：06 April 2020，
  
  Online First：18 May 2021，
  
  Published：2021-05
- Accepted：
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Ye CHEN, Siqi LI, Xiaoqing XU, et al. Characterization of microbial communities in sediments of the South Yellow Sea[J]. Journal of Oceanology and Limnology, 2021, 39(3): 846-864.
DOI：

Ye CHEN, Siqi LI, Xiaoqing XU, et al. Characterization of microbial communities in sediments of the South Yellow Sea[J]. Journal of Oceanology and Limnology, 2021, 39(3): 846-864. DOI： 10.1007/s00343-020-0106-6.

摘要

Abstract

Illumina sequencing and quantitative PCR (qPCR) based on the 16S ribosomal RNA (rRNA) gene were conducted to characterize the vertical distribution of bacterial and archaeal communities in the sediments of two sites from the South Yellow Sea. Both bacterial and archaeal communities showed a clear stratified distribution with sediment depth. The microbial communities in the upper layers were distinct from those in the deeper layers; the relative abundances of sequences of Thaumarchaeota

Gammaproteobacteria

and Actinobacteria were higher in the upper than in the deeper sediments

whereas the sequences of Bathyarchaeia

Lokiarchaeota

Euryarchaeota

Chloroflexi

and Deltaproteobacteria were relatively more abundant in the deeper sediments. Sediment depth and total organic carbon (TOC) can significantly influence both the bacterial and archaeal communities. Furthermore

bacterial and archaeal groups potentially involved in nitrogen

sulfur

and methane metabolism were detected in both sites. In our study

both ammonia-oxidizing bacteria (

Nitrospira

) and ammonia-oxidizing archaea (

Candidatus

Nitrosopumilus

) were responsible for ammonia oxidization. Additionally

sulfur-reducing bacteria

SEEP

SRB1

forming consortia with anaerobic methane-oxidizing archaea ANME-2a-2b were capable of anaerobic methane oxidation (AOM) in the 3400-02 sediment samples.

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Keywords

references

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