The levels of microbial diversity in different water layers of saline Chagan Lake, China

Lei ZHANG; Yanan CAI; Miao JIANG; Jing DAI; Xiyao GUO; Wei LI; Yuehong LI

doi:10.1007/s00343-019-9027-7

Your Location：

Home >

Browse articles >

The levels of microbial diversity in different water layers of saline Chagan Lake, China

Ecology | Updated：2023-04-27

- The levels of microbial diversity in different water layers of saline Chagan Lake, China
- Journal of Oceanology and Limnology Vol. 38, Issue 2, Pages: 395-407(2020)
- Affiliations：
  
  1.College of Animal Science and Technology, Jilin Agriculture University, Changchun 130118, China
  2.Biomarker Technologies Co. Ltd., Beijing 100000, China
  3.Department of Clinical Laboratory, China-Japan Union Hospital, Changchun 130000, China
- Author bio：
  
  LI Yuehong, liyhong@sina.com
- Funds：
- DOI：10.1007/s00343-019-9027-7
  CLC：
- Received：30 January 2019，
  
  Accepted：08 April 2019，
  
  Online First：19 June 2019，
  
  Published：2020-02
- Accepted：
Scan QR Code
Lei ZHANG, Yanan CAI, Miao JIANG, et al. The levels of microbial diversity in different water layers of saline Chagan Lake, China[J]. Journal of Oceanology and Limnology, 2020, 38(2): 395-407.
DOI：

Lei ZHANG, Yanan CAI, Miao JIANG, et al. The levels of microbial diversity in different water layers of saline Chagan Lake, China[J]. Journal of Oceanology and Limnology, 2020, 38(2): 395-407. DOI： 10.1007/s00343-019-9027-7.

摘要

Abstract

Saline lakes represent a particularly interesting aquatic environment for harboring high microbial diversity. However

the microbial diversity in different states and locations of saline lake is often overlooked. We studied for the first time the diversity and relative composition of the microbial communities in the Chagan Lake

NE China

and investigated the differences in microbial species and physical and chemical factors in different geographical localities of the lake. After extracting the total DNA of the sample

we tested the library with the established library

sequenced the qualified library with Illumina HiSeq 2500

and studied the bacterial diversity by 16S rRNA targeted metagenomics analysis. Results reveal that the highest microbial abundance in Chagan Lake at genus level was

Proteobacterium

followed by

Actinomycetes

and

Bacteroides

. In addition

we compared the microbial composition within the lake using alpha- and beta-diversity indices

showing that both diversity and evenness were the highest in the middle of the lake and lowest in the west of lake areas

and in the upper

middle

and lower depth of water columns

the low water column had the highest species number in the whole water environment

but the difference was not significant. We believe that physicochemical factors contribute to the formation of microbial community composition and diversity. In aquaculture industry

it is impossible apply horticulture for making full use of the spatial differences in the microbial composition of the water. Therefore

combining cultured aquatic animal with the most suitable microbial species is a good way to boost the breeding effect for greater economic value.

关键词

Keywords

references

R M M Abed , A Ramette , V Hübner , P De Deckker , D De Beer . Microbial diversity of eolian dust sources from saline lake sediments and biological soil crusts in arid Southern Australia . FEMS Microbiology Ecology , 2012 . 80 ( 2 ): 294 - 304 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/j.1574-6941.2011.01289.x http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/j.1574-6941.2011.01289.x , .

A L K Abia , E Ubomba-Jaswa , M N B Momba . Impact of seasonal variation on Escherichia coli concentrations in the riverbed sediments in the Apies River, South Africa . Science of the Total Environment , 2015 . 537 462 - 469 . DOI: 10.1016/j.scitotenv.2015.07.132 http://doi.org/10.1016/j.scitotenv.2015.07.132 .

A A Al-Thukair , R M M Abed , L Mohamed . Microbial community of cyanobacteria mats in the intertidal zone of oil-polluted coast of Saudi Arabia . Marine Pollution Bulletin , 2007 . 54 ( 2 ): 173 - 179 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=e660550c660c24cc02be255bdcecb755 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=e660550c660c24cc02be255bdcecb755 , .

D Berry , C W Xi , L Raskin . Microbial ecology of drinking water distribution systems . Current Opinion in Biotechnology , 2006 . 17 ( 3 ): 297 - 302 . DOI: 10.1016/j.copbio.2006.05.007 http://doi.org/10.1016/j.copbio.2006.05.007 .

K Besemer , G Singer , C Quince , E Bertuzzo , W Sloan , T J Battin . Headwaters are critical reservoirs of microbial diversity for fluvial networks . Proceedings of the Royal Society B: Biological Sciences , 2013 . 280 ( 1771 ): 20131760 DOI: 10.1098/rspb.2013.1760 http://doi.org/10.1098/rspb.2013.1760 .

E O Casamayor , H Schäfer , L Bañeras , C Pedrós-Alió , G Muyzer . Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis . Applied and Environmental Microbiology , 2000 . 66 ( 2 ): 499 - 508 . DOI: 10.1128/AEM.66.2.499-508.2000 http://doi.org/10.1128/AEM.66.2.499-508.2000 .

H B Chen , P C Boutros . VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R . BMC Bioinformatics , 2011 . 12 35 DOI: 10.1186/1471-2105-12-35 http://doi.org/10.1186/1471-2105-12-35 .

C M Chiriac , E Szekeres , K Rudi , A Baricz , A Hegedus , N Dragoş , C Coman . Differences in temperature and water chemistry shape distinct diversity patterns in thermophilic microbial communities . Applied and Environmental Microbiology , 2017 . 83 ( 21 ): e01363 - 17 . .

C Coman , B Drugă , A Hegedus , C Sicora , N Dragos . Archaeal and bacterial diversity in two hot spring microbial mats from a geothermal region in Romania . Extremophiles , 2013 . 17 ( 3 ): 523 - 534 . DOI: 10.1007/s00792-013-0537-5 http://doi.org/10.1007/s00792-013-0537-5 .

R C Edgar . Search and clustering orders of magnitude faster than BLAST . Bioinformatics , 2010 . 26 ( 19 ): 2 460 - 2 461 . DOI: 10.1093/bioinformatics/btq461 http://doi.org/10.1093/bioinformatics/btq461 .

M W Hahn . The microbial diversity of inland waters . Current Opinion in Biotechnology , 2006 . 17 ( 3 ): 256 - 261 . DOI: 10.1016/j.copbio.2006.05.006 http://doi.org/10.1016/j.copbio.2006.05.006 .

B Y Jia , Y Tang , L Y Tian , L Franz , C Alewell , J H Huang . Impact of fish farming on phosphorus in reservoir sediments . Scientific Reports , 2015 . 5 16 617 DOI: 10.1038/srep16617 http://doi.org/10.1038/srep16617 .

H C Jiang , H L Dong , G X Zhang , B S Yu , L R Chapman , M W Fields . Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China . Applied and Environmental Microbiology , 2006 . 72 ( 6 ): 3 832 - 3 845 . DOI: 10.1128/AEM.02869-05 http://doi.org/10.1128/AEM.02869-05 .

J G Jiang , Y F Shen . Development of the microbial communities in Lake Donghu in relation to water quality . Environmental Monitoring and Assessment , 2007 . 127 ( 1-3 ): 227 - 236 . DOI: 10.1007/s10661-006-9275-9 http://doi.org/10.1007/s10661-006-9275-9 .

A A Joshi , P P Kanekar , A S Kelkar , Y S Shouche , A A Vani , S B Borgave , S S Sarnaik . Cultivable bacterial diversity of alkaline Lonar Lake, India . Microbial Ecology , 2008 . 55 ( 2 ): 163 - 172 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=231013eccb8993ca504d65b2b876dc17 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=231013eccb8993ca504d65b2b876dc17 , .

P P Kandel , Z Pasternak , J Van Rijn , O Nahum , E Jurkevitch . Abundance, diversity and seasonal dynamics of predatory bacteria in aquaculture zero discharge systems . FEMS Microbiology Ecology , 2014 . 89 ( 1 ): 149 - 161 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/1574-6941.12342 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/1574-6941.12342 , .

L Khandeparker , N Kuchi , D Kale , A C Anil . Microbial community structure of surface sediments from a tropical estuarine environment using next generation sequencing . Ecological Indicators , 2017 . 74 172 - 181 . DOI: 10.1016/j.ecolind.2016.11.023 http://doi.org/10.1016/j.ecolind.2016.11.023 .

A Kobiyama , K Ikeo , M S Reza , J Rashid , Y Yamada , Y Ikeda , D Ikeda , N Mizusawa , S Sato , T Ogata , M Jimbo , T Kudo , S Kaga , S Watanabe , K Naiki , Y Kaga , K Mineta , V Bajic , T Gojobori , S Watabe . Metagenome-based diversity analyses suggest a strong locality signal for bacterial communities associated with oyster aquaculture farms in Ofunato Bay . Gene , 2018 . ( 665 ): 149 - 154 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=1a676e1ebd61b1e59f63481f4d767ec0 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=1a676e1ebd61b1e59f63481f4d767ec0 , .

M Korlević , L Šupraha , Z Ljubešić , J Henderiks , I Ciglenečki , J Dautović , S Orlić . Bacterial diversity across a highly stratified ecosystem: A salt-wedge Mediterranean estuary . Systematic and Applied Microbiology , 2016 . 39 ( 6 ): 398 - 408 . DOI: 10.1016/j.syapm.2016.06.006 http://doi.org/10.1016/j.syapm.2016.06.006 .

T F Liu , T Z Jia , J N Chen , X Y Liu , M J Zhao , P P Liu . Analysis of microbial diversity in Shenqu with different fermentation times by PCR-DGGE . Brazilian Journal of Microbiology , 2017 . 48 ( 2 ): 246 - 250 . DOI: 10.1016/j.bjm.2017.01.002 http://doi.org/10.1016/j.bjm.2017.01.002 .

E M Maloney , K Liber , J V Headley , K M Peru , C A Morrissey . Neonicotinoid insecticide mixtures: Evaluation of laboratory-based toxicity predictions under semi-controlled field conditions . Environmental Pollution , 2018 . 243 1 727 - 1 739 . DOI: 10.1016/j.envpol.2018.09.008 http://doi.org/10.1016/j.envpol.2018.09.008 .

R Mwirichia , S Cousin , A W Muigai , H I Boga , E Stackebrandt . Bacterial diversity in the haloalkaline Lake Elmenteita, Kenya . Current Microbiology , 2011 . 62 ( 1 ): 209 - 221 . DOI: 10.1007/s00284-010-9692-4 http://doi.org/10.1007/s00284-010-9692-4 .

R J Newton , S E Jones , A Eiler , K D McMahon , S Bertilsson . A guide to the natural history of freshwater lake bacteria . Microbiology and Molecular Biology Reviews , 2011 . 75 ( 1 ): 14 - 49 . http://d.old.wanfangdata.com.cn/OAPaper/oai_pubmedcentral.nih.gov_3063352 http://d.old.wanfangdata.com.cn/OAPaper/oai_pubmedcentral.nih.gov_3063352 , .

D Paul , S V Kumbhare , S S Mhatre , S P Chowdhury , S A Shetty , N P Marathe , S Bhute , Y S Shouche . Exploration of microbial diversity and community structure of Lonar Lake: the only hypersaline meteorite crater lake within basalt rock . Frontiers in Microbiology , 2015 . 6 1 553 .

T L Perkins , K Clements , J H Baas , C F Jago , D L Jones , S K Malham , J E McDonald . Sediment composition influences spatial variation in the abundance of human pathogen indicator bacteria within an estuarine environment . PLoS One , 2014 . 9 ( 11 ): e112951 DOI: 10.1371/journal.pone.0112951 http://doi.org/10.1371/journal.pone.0112951 .

I S Pessi , P D C Maalouf , IV H D Laughinghouse , D Baurain , A Wilmotte . On the use of high-throughput sequencing for the study of cyanobacterial diversity in Antarctic aquatic mats . Journal of Phycology , 2016 . 52 ( 3 ): 356 - 368 . DOI: 10.1111/jpy.12399 http://doi.org/10.1111/jpy.12399 .

K Roske , R Sachse , C Scheerer , I Röske . Microbial diversity and composition of the sediment in the drinking water reservoir Saidenbach (Saxonia, Germany) . Systematic and Applied Microbiology , 2012 . 35 ( 1 ): 35 - 44 . DOI: 10.1016/j.syapm.2011.09.002 http://doi.org/10.1016/j.syapm.2011.09.002 .

V H Smith . Microbial diversity-productivity relationships in aquatic ecosystems . FEMS Microbiology Ecology , 2007 . 62 ( 2 ): 181 - 186 . DOI: 10.1111/j.1574-6941.2007.00381.x http://doi.org/10.1111/j.1574-6941.2007.00381.x .

M L Sogin , H G Morrison , J A Huber , D M Welch , S M Huse , P R Neal , J M Arrieta , G J Herndl . Microbial diversity in the deep sea and the underexplored "rare biosphere" . Proceedings of the National Academy of Sciences of the United States of America , 2006 . 103 ( 32 ): 12 115 - 12 120 . DOI: 10.1073/pnas.0605127103 http://doi.org/10.1073/pnas.0605127103 .

I I Valdebenito , P C Gallegos , B R Effer . Gamete quality in fish: evaluation parameters and determining factors . Zygote , 2015 . 23 ( 2 ): 177 - 197 . DOI: 10.1017/S0967199413000506 http://doi.org/10.1017/S0967199413000506 .

P M Valdespino-Castillo , R J Alcantara-Hernandez , J Alcocer , M Merino-Ibarra , M Macek , L I Falcón . Alkaline phosphatases in microbialites and bacterioplankton from Alchichica soda lake, Mexico . FEMS Microbiology Ecology , 2014 . 90 ( 2 ): 504 - 519 . http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/1574-6941.12411 http://www.wanfangdata.com.cn/details/detail.do?_type=perio&id=10.1111/1574-6941.12411 , .

Z S Venter , K Jacobs , H J Hawkins . The impact of crop rotation on soil microbial diversity: A meta-analysis . Pedobiologia , 2016 . 59 ( 4 ): 215 - 223 . DOI: 10.1016/j.pedobi.2016.04.001 http://doi.org/10.1016/j.pedobi.2016.04.001 .

Y Wang , H F Sheng , Y He , J Y Wu , Y X Jiang , N F Tam , H W Zhou . Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of Illumina tags . Applied and Environmental Microbiology , 2012 . 78 ( 23 ): 8 264 - 8 271 . DOI: 10.1128/AEM.01821-12 http://doi.org/10.1128/AEM.01821-12 .

A A Wani , V P Surakasi , J Siddharth , R G Raghavan , M S Patole , D Ranade , Y S Shouche . Molecular analyses of microbial diversity associated with the Lonar soda lake in India: an impact crater in a basalt area . Research in Microbiology , 2006 . 157 ( 10 ): 928 - 937 . DOI: 10.1016/j.resmic.2006.08.005 http://doi.org/10.1016/j.resmic.2006.08.005 .

A Wobus , C Bleul , S Maassen , C Scheerer , M Schuppler , E Jacobs , I Röske . Microbial diversity and functional characterization of sediments from reservoirs of different trophic state . FEMS Microbiology Ecology , 2003 . 46 ( 3 ): 331 - 347 . DOI: 10.1016/S0168-6496(03)00249-6 http://doi.org/10.1016/S0168-6496(03)00249-6 .

Q L Wu , A Chatzinotas , J J Wang , J Boenigk . Genetic diversity of eukaryotic plankton assemblages in Eastern Tibetan Lakes differing by their salinity and altitude . Microbial Ecology , 2009 . 58 ( 3 ): 569 - 581 . DOI: 10.1007/s00248-009-9526-8 http://doi.org/10.1007/s00248-009-9526-8 .

L Zhang , M R Hipsey , G X Zhang , B Busch , H Y Li . Simulation of multiple water source ecological replenishment for Chagan Lake based on coupled hydrodynamic and water quality models . Water Science and Technology: Water Supply , 2017 . 17 ( 6 ): 1 774 - 1 784 . DOI: 10.2166/ws.2017.079 http://doi.org/10.2166/ws.2017.079 .

L L Zhu , B X Yan , L X Wang , X F Pan . Mercury concentration in the muscle of seven fish species from Chagan Lake, Northeast China . Environmental Monitoring and Assessment , 2012 . 184 ( 3 ): 1 299 - 1 310 . DOI: 10.1007/s10661-011-2041-7 http://doi.org/10.1007/s10661-011-2041-7 .

Views

Downloads

CSCD

Alert me when the article has been cited

Submit

Tools

Publicity Resources

Contrasting vertical distribution between prokaryotes and fungi in different water masses on the Ninety-East Ridge, Southern Indian Ocean

Effect of carbon and nitrogen ratio control on Artemia growth, water quality, biofloc microbial diversity under high salinity and zero-water exchange culture condition

Microbial diversity in Huguangyan Maar Lake of China revealed by high-throughput sequencing

Microbial diversity in the sediments of the southern Mariana Trench

Biogeochemical conversion of sulfur species in saline lakes of Steppe Altai

Related Author

Tengfei Xu

Shujiang Li

Fei Teng

Xiao Luan

Mutai Bao

Zhisong Cui

Shujun Li

Li Zheng

Related Institution

State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences

Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao)

Marine Bioresources and Environment Research Center, First Institute of Oceanography, Ministry of Natural Resources of China

Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, and College of Chemistry and Chemical Engineering, Ocean University of China

Asian Regional Artemia Reference Center, Tianjin Key Laboratory of Marine Resources and Chemistry, College of Marine and Environmental Sciences, Tianjin University of Science and Technology

Address：Editorial Office of JOL, 88 Haijun Rd. Qingdao, 266000, China
Tel：+86-532-82898754 Email：jol@qdio.ac.cn
Technical support is provided by Beijing Founder electronics co., LTD 京ICP备09064830号-19 京公网安备11010802024621
It is recommended to read the content of this site in Chrome&IE9+. Please switch to extreme mode in browser 360.
Cookies We use cookies to help provide and enhance our service and tailor content. By continuing, you agree to the use of cookies.

⁰