Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole <italic style="font-style: italic">Cynoglossus semilaevis</italic>

Xiaoli JIANG; Xiaohong JING; Yan LÜ; Changmin SHAN; Jiahua LI; Yan YU; Yuyong WU; Yeying SUN

doi:10.1007/s00343-019-8287-6

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Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis

Biology | Updated：2023-04-27

- Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis
- Journal of Oceanology and Limnology Vol. 38, Issue 1, Pages: 226-235(2020)
- Affiliations：
  
  1.College of Pharmacy, Binzhou Medical University, Yantai 264003, China
  2.College of Life Science, Yantai University, Yantai 264005, China
- Author bio：
  
  SUN Yeying, sunyy21cn@163.com
- Funds：
- DOI：10.1007/s00343-019-8287-6
  CLC：
- Received：17 October 2018，
  
  Accepted：29 January 2019，
  
  Online First：21 March 2019，
  
  Published：2020-01
- Accepted：
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Xiaoli JIANG, Xiaohong JING, Yan LÜ, et al. Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis[J]. Journal of Oceanology and Limnology, 2020, 38(1): 226-235.
DOI：

Xiaoli JIANG, Xiaohong JING, Yan LÜ, et al. Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis[J]. Journal of Oceanology and Limnology, 2020, 38(1): 226-235. DOI： 10.1007/s00343-019-8287-6.

摘要

Abstract

At present

the function and profile of long noncoding RNAs (lncRNAs) in half-smooth tongue soles

Cynoglossus semilaevis

remain poorly understood. Therefore

we identified lncRNAs in the species using large-scale deep sequencing approaches. A total of 96 726 222 clean reads and 2497 lncRNAs were obtained from the compound samples. In total

1 694 known lncRNAs and 803 novel lncRNAs were identified. Most of the novel lncRNAs distributed mainly in a range of 200-3 000 nt and contained 2-6 exons. Six novel lncRNAs were selected for expression analysis by quantitative reverse transcription-polymerase chain reaction

of which lnc_770 and lnc_150 were expressed mainly in the ovary. This study provides a valuable resource for lncRNA studies of half-smooth tongue sole and improves our understanding of the function of non-coding RNA in fish.

关键词

Keywords

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Related Institution

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Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology

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Genome-wide identification and prediction of long noncoding RNAs in half-smooth tongue sole Cynoglossus semilaevis

DOI：10.1007/s00343-019-8287-6

摘要

Abstract

关键词

Keywords

references