Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus <italic style="font-style: italic">Hildenbrandia </italic>(Florideophyceae, Rhodophyta)

Fangru NAN; Juan LI; Jia FENG; Junping LÜ; Qi LIU; Xudong LIU; Shulian XIE

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Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus Hildenbrandia (Florideophyceae, Rhodophyta)

Biology | Updated：2024-10-12

- Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus Hildenbrandia (Florideophyceae, Rhodophyta)
- Journal of Oceanology and Limnology Vol. 41, Issue 6, Pages: 2324-2335(2023)
- Affiliations：
  
  School of Life Science, Shanxi University, Taiyuan 030006, China
- Author bio：
  
  xiesl@sxu.edu.cn
- Funds：
- DOI：
  CLC：
- Received：30 March 2022，
  
  Accepted：27 June 2022，
  
  Online First：15 September 2022，
  
  Published：01 November 2023
- Accepted：
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NAN Fangru,LI Juan,FENG Jia,et al.Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus Hildenbrandia (Florideophyceae, Rhodophyta)[J].Journal of Oceanology and Limnology,2023,41(06):2324-2335.
DOI：

NAN Fangru,LI Juan,FENG Jia,et al.Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus Hildenbrandia (Florideophyceae, Rhodophyta)[J].Journal of Oceanology and Limnology,2023,41(06):2324-2335. DOI：

摘要

Abstract

Hildenbrandia

is an early diverged lineage in Florideophyceae

Rhodophyta. The species diversity of this genus is still unresolved due to the simple morphology and limited molecular information. The mitochondrial genome of freshwater

jigongshanensis

was determined in this study. The freshwater

jigongshanensis

had a larger mitochondrial genome than the marine

rubra

and GC content was higher. Collinear alignment structure was observed between the mitochondrial genomes of

jigongshanensis

and

rubra

except for one block that was encoded on the complement strand. More introns were found in mitochondrial genome of

jigongshanensis

than in

rubra

and

jigongshanensis

shares the common feature with Bangiophyceae that two introns were distributed in

cox

1. Comparison of mitochondrial genome organization suggests that

jigongshanensis

preserves characters that could be hypothetically more similar to the ancestor of Bangiophyceae and Florideophyceae

which differ with previous studies based on chloroplast

and nuclear markers. More mitochondrial genomes and phylogenetic analyses combing nuclear

chloroplast and mitochondrial genomes are needed to clarify this discrepancy. Mitochondrion-based phylogeny in this study resulted in better solution at both the deep and recent derived nodes than single-gene phylogenies. Most protein-coding genes between

jigongshanensis

and

rubra

were identical except

atp

which was present in

jigongshanensis

while absent from

rubra

. This finding follows the trend that high Ka/Ks ratio genes are more frequently lost than low Ka/Ks ratio ones in red algae.

关键词

Keywords

references

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Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus Hildenbrandia (Florideophyceae, Rhodophyta)

DOI：

摘要

Abstract

关键词

Keywords

references